Hb_002042_090

Information

Type -
Description -
Location Contig2042: 90377-93198
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02530g
description POPTRDRAFT_570863; hypothetical protein
nr
ID XP_012089086.1
description PREDICTED: root phototropism protein 3-like [Jatropha curcas]
swissprot
ID Q5KS50
description Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1
trembl
ID A0A067JHV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23364 PE=4 SV=1
Gene Ontology
ID GO:0016567
description root phototropism protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20940: 90366-93227 , PASA_asmbl_20941: 90394-93179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_090 0.0 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
2 Hb_009476_030 0.0459972379 - - fatty acid desaturase [Manihot esculenta]
3 Hb_001789_220 0.0509743588 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
4 Hb_001205_140 0.0545006962 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
5 Hb_007853_030 0.0554410311 - - structural molecule, putative [Ricinus communis]
6 Hb_005345_020 0.0558648719 - - Root phototropism protein, putative [Ricinus communis]
7 Hb_000210_030 0.0576284268 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
8 Hb_000018_110 0.0591542369 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
9 Hb_001675_090 0.0625716464 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
10 Hb_005460_040 0.0657475534 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
11 Hb_145502_010 0.0681931544 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
12 Hb_000069_220 0.0704938347 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
13 Hb_000262_090 0.071518466 - - Root phototropism protein, putative [Ricinus communis]
14 Hb_000142_050 0.0723192036 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
15 Hb_041433_010 0.0735794166 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_007681_010 0.0756060839 - - hypothetical protein RCOM_2128750 [Ricinus communis]
17 Hb_001233_050 0.0771688772 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
18 Hb_004553_050 0.0773799836 - - PREDICTED: probable inactive receptor kinase At5g10020 [Jatropha curcas]
19 Hb_003573_030 0.0787600821 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
20 Hb_002245_050 0.0787755272 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002042_090 Hb_002042_090 Hb_009476_030 Hb_009476_030 Hb_002042_090--Hb_009476_030 Hb_001789_220 Hb_001789_220 Hb_002042_090--Hb_001789_220 Hb_001205_140 Hb_001205_140 Hb_002042_090--Hb_001205_140 Hb_007853_030 Hb_007853_030 Hb_002042_090--Hb_007853_030 Hb_005345_020 Hb_005345_020 Hb_002042_090--Hb_005345_020 Hb_000210_030 Hb_000210_030 Hb_002042_090--Hb_000210_030 Hb_009476_030--Hb_005345_020 Hb_001975_120 Hb_001975_120 Hb_009476_030--Hb_001975_120 Hb_001675_090 Hb_001675_090 Hb_009476_030--Hb_001675_090 Hb_041433_010 Hb_041433_010 Hb_009476_030--Hb_041433_010 Hb_009476_030--Hb_001789_220 Hb_001789_220--Hb_001205_140 Hb_001789_220--Hb_041433_010 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_001789_220--Hb_005345_020 Hb_007681_010 Hb_007681_010 Hb_001789_220--Hb_007681_010 Hb_001205_140--Hb_006117_030 Hb_145502_010 Hb_145502_010 Hb_001205_140--Hb_145502_010 Hb_000018_110 Hb_000018_110 Hb_001205_140--Hb_000018_110 Hb_003598_070 Hb_003598_070 Hb_001205_140--Hb_003598_070 Hb_147976_010 Hb_147976_010 Hb_001205_140--Hb_147976_010 Hb_007853_030--Hb_007681_010 Hb_001166_010 Hb_001166_010 Hb_007853_030--Hb_001166_010 Hb_000069_220 Hb_000069_220 Hb_007853_030--Hb_000069_220 Hb_000069_440 Hb_000069_440 Hb_007853_030--Hb_000069_440 Hb_000172_660 Hb_000172_660 Hb_007853_030--Hb_000172_660 Hb_005345_020--Hb_001675_090 Hb_005345_020--Hb_041433_010 Hb_001571_100 Hb_001571_100 Hb_005345_020--Hb_001571_100 Hb_005345_020--Hb_001975_120 Hb_000262_090 Hb_000262_090 Hb_000210_030--Hb_000262_090 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_002818_110 Hb_002818_110 Hb_000210_030--Hb_002818_110 Hb_000210_030--Hb_001675_090 Hb_000821_030 Hb_000821_030 Hb_000210_030--Hb_000821_030 Hb_006573_110 Hb_006573_110 Hb_000210_030--Hb_006573_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0107606 0.31499 18.7312 5.56204 0 0.0104414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0364331 0.130301 13.3965

CAGE analysis