Hb_002042_130

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig2042: 100525-101289
Sequence    

Annotation

kegg
ID tcc:TCM_026585
description Nuclear transcription factor Y subunit C-9 isoform 1
nr
ID XP_012089091.1
description PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
swissprot
ID Q8L4B2
description Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1
trembl
ID A0A067JU66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23368 PE=4 SV=1
Gene Ontology
ID GO:0016602
description nuclear transcription factor y subunit c-9 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20944: 99567-102214 , PASA_asmbl_20945: 100310-102214 , PASA_asmbl_20946: 99567-102214
cDNA
(Sanger)
(ID:Location)		 046_P18.ab1: 100585-102214

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_130 0.0 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
2 Hb_000538_230 0.1027732631 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
3 Hb_000302_260 0.1089783759 - - hypothetical protein [Bruguiera gymnorhiza]
4 Hb_034688_020 0.1123935224 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
5 Hb_000649_110 0.1127485969 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
6 Hb_001159_110 0.1136494674 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
7 Hb_005074_030 0.1192290115 - - -
8 Hb_005306_190 0.1197064409 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
9 Hb_008173_110 0.121189752 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000451_070 0.1223450958 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_189208_020 0.1244264792 - - LRX2, putative [Ricinus communis]
12 Hb_109484_010 0.1245754701 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
13 Hb_000749_050 0.1258523537 - - mitochondrial thioredoxin [Hevea brasiliensis]
14 Hb_001894_050 0.1268173081 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
15 Hb_007943_050 0.1274437461 - - peroxiredoxin, putative [Ricinus communis]
16 Hb_000215_320 0.1284800023 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_000975_360 0.1290852048 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000878_070 0.1295032799 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
19 Hb_000430_020 0.1309151924 - - -
20 Hb_000045_300 0.1310259737 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002042_130 Hb_002042_130 Hb_000538_230 Hb_000538_230 Hb_002042_130--Hb_000538_230 Hb_000302_260 Hb_000302_260 Hb_002042_130--Hb_000302_260 Hb_034688_020 Hb_034688_020 Hb_002042_130--Hb_034688_020 Hb_000649_110 Hb_000649_110 Hb_002042_130--Hb_000649_110 Hb_001159_110 Hb_001159_110 Hb_002042_130--Hb_001159_110 Hb_005074_030 Hb_005074_030 Hb_002042_130--Hb_005074_030 Hb_000430_020 Hb_000430_020 Hb_000538_230--Hb_000430_020 Hb_000215_320 Hb_000215_320 Hb_000538_230--Hb_000215_320 Hb_000538_230--Hb_001159_110 Hb_000538_230--Hb_005074_030 Hb_001205_240 Hb_001205_240 Hb_000538_230--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000538_230--Hb_003761_010 Hb_000402_210 Hb_000402_210 Hb_000302_260--Hb_000402_210 Hb_028487_020 Hb_028487_020 Hb_000302_260--Hb_028487_020 Hb_189208_020 Hb_189208_020 Hb_000302_260--Hb_189208_020 Hb_000086_340 Hb_000086_340 Hb_000302_260--Hb_000086_340 Hb_088753_010 Hb_088753_010 Hb_000302_260--Hb_088753_010 Hb_001146_010 Hb_001146_010 Hb_034688_020--Hb_001146_010 Hb_000749_050 Hb_000749_050 Hb_034688_020--Hb_000749_050 Hb_034688_020--Hb_000538_230 Hb_034688_020--Hb_005074_030 Hb_034688_020--Hb_000430_020 Hb_000173_470 Hb_000173_470 Hb_034688_020--Hb_000173_470 Hb_001221_110 Hb_001221_110 Hb_000649_110--Hb_001221_110 Hb_000028_370 Hb_000028_370 Hb_000649_110--Hb_000028_370 Hb_002205_110 Hb_002205_110 Hb_000649_110--Hb_002205_110 Hb_008725_230 Hb_008725_230 Hb_000649_110--Hb_008725_230 Hb_001359_050 Hb_001359_050 Hb_000649_110--Hb_001359_050 Hb_000886_050 Hb_000886_050 Hb_000649_110--Hb_000886_050 Hb_000230_390 Hb_000230_390 Hb_001159_110--Hb_000230_390 Hb_001159_110--Hb_005074_030 Hb_000614_250 Hb_000614_250 Hb_001159_110--Hb_000614_250 Hb_004453_050 Hb_004453_050 Hb_001159_110--Hb_004453_050 Hb_001159_110--Hb_000430_020 Hb_007508_090 Hb_007508_090 Hb_001159_110--Hb_007508_090 Hb_005074_030--Hb_000430_020 Hb_001123_060 Hb_001123_060 Hb_005074_030--Hb_001123_060 Hb_000649_130 Hb_000649_130 Hb_005074_030--Hb_000649_130 Hb_005074_030--Hb_000749_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.94988 23.32 9.26245 14.1978 4.6007 8.08199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5622 20.6172 11.9728 14.3647 4.38966

CAGE analysis