Hb_002042_150

Information

Type -
Description -
Location Contig2042: 116063-119182
Sequence    

Annotation

kegg
ID rcu:RCOM_1431020
description microsomal signal peptidase 23 kD subunit, putative
nr
ID XP_012089096.1
description PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
swissprot
ID Q53YF3
description Signal peptidase complex subunit 3B OS=Arabidopsis thaliana GN=At5g27430 PE=2 SV=1
trembl
ID A0A067JL28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23371 PE=4 SV=1
Gene Ontology
ID GO:0005787
description signal peptidase complex subunit 3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_150 0.0 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
2 Hb_045003_010 0.0566498986 - - Stomatin-1, putative [Ricinus communis]
3 Hb_004109_340 0.0645536082 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
4 Hb_000179_270 0.0781234649 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
5 Hb_000384_070 0.0797105362 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011344_120 0.0824057811 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
7 Hb_004108_220 0.0839922848 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
8 Hb_062537_010 0.0842336093 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
9 Hb_000087_070 0.0860051937 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
10 Hb_001189_070 0.0866865659 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
11 Hb_002301_160 0.0887164284 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
12 Hb_000666_100 0.0892889203 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
13 Hb_000849_130 0.0917869874 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
14 Hb_000347_240 0.0919012489 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
15 Hb_001353_010 0.0923400425 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
16 Hb_023001_040 0.0927437478 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
17 Hb_002995_050 0.0940062238 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
18 Hb_000310_090 0.0940995733 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
19 Hb_186982_040 0.094261622 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
20 Hb_001489_110 0.0942961404 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]

Gene co-expression network

sample Hb_002042_150 Hb_002042_150 Hb_045003_010 Hb_045003_010 Hb_002042_150--Hb_045003_010 Hb_004109_340 Hb_004109_340 Hb_002042_150--Hb_004109_340 Hb_000179_270 Hb_000179_270 Hb_002042_150--Hb_000179_270 Hb_000384_070 Hb_000384_070 Hb_002042_150--Hb_000384_070 Hb_011344_120 Hb_011344_120 Hb_002042_150--Hb_011344_120 Hb_004108_220 Hb_004108_220 Hb_002042_150--Hb_004108_220 Hb_001353_010 Hb_001353_010 Hb_045003_010--Hb_001353_010 Hb_154948_040 Hb_154948_040 Hb_045003_010--Hb_154948_040 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_002995_050 Hb_002995_050 Hb_045003_010--Hb_002995_050 Hb_000136_260 Hb_000136_260 Hb_004109_340--Hb_000136_260 Hb_011628_060 Hb_011628_060 Hb_004109_340--Hb_011628_060 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070 Hb_000087_070 Hb_000087_070 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_000179_270--Hb_001189_070 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_000384_070--Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_002045_070 Hb_002045_070 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_002133_020 Hb_002133_020 Hb_000384_070--Hb_002133_020 Hb_007928_030 Hb_007928_030 Hb_011344_120--Hb_007928_030 Hb_005914_170 Hb_005914_170 Hb_011344_120--Hb_005914_170 Hb_011344_120--Hb_001189_070 Hb_009787_030 Hb_009787_030 Hb_011344_120--Hb_009787_030 Hb_011344_120--Hb_004108_220 Hb_000347_240 Hb_000347_240 Hb_011344_120--Hb_000347_240 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.31046 5.72874 10.6515 21.5754 6.36015 8.31224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3686 17.9238 8.66784 12.6301 9.03494

CAGE analysis