Hb_002042_170

Information

Type -
Description -
Location Contig2042: 129280-140331
Sequence    

Annotation

kegg
ID tcc:TCM_026592
description RING/U-box superfamily protein
nr
ID XP_007030903.1
description RING/U-box superfamily protein [Theobroma cacao]
swissprot
ID Q8LA32
description Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 SV=1
trembl
ID A0A061F239
description RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_026592 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase lul4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20955: 135932-140237
cDNA
(Sanger)
(ID:Location)		 007_G14.ab1: 137277-140237 , 046_H22.ab1: 137229-140237

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_170 0.0 - - RING/U-box superfamily protein [Theobroma cacao]
2 Hb_004774_020 0.0894068864 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
3 Hb_000156_090 0.0997492105 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
4 Hb_003925_040 0.1009764636 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
5 Hb_010872_070 0.1050296843 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000656_390 0.111248758 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
7 Hb_171900_020 0.1117019543 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
8 Hb_002900_120 0.1135615489 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
9 Hb_013241_010 0.1192299877 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
10 Hb_001140_090 0.1198062303 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004117_170 0.1212382957 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
12 Hb_006970_050 0.1221047197 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
13 Hb_000951_130 0.122750772 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
14 Hb_000638_280 0.123337371 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_084490_010 0.1237985273 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
16 Hb_004208_140 0.1241558105 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
17 Hb_002965_050 0.1249152736 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
18 Hb_026048_110 0.1276977573 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
19 Hb_000291_010 0.1282890851 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
20 Hb_001439_230 0.1296193402 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002042_170 Hb_002042_170 Hb_004774_020 Hb_004774_020 Hb_002042_170--Hb_004774_020 Hb_000156_090 Hb_000156_090 Hb_002042_170--Hb_000156_090 Hb_003925_040 Hb_003925_040 Hb_002042_170--Hb_003925_040 Hb_010872_070 Hb_010872_070 Hb_002042_170--Hb_010872_070 Hb_000656_390 Hb_000656_390 Hb_002042_170--Hb_000656_390 Hb_171900_020 Hb_171900_020 Hb_002042_170--Hb_171900_020 Hb_004774_020--Hb_003925_040 Hb_002900_120 Hb_002900_120 Hb_004774_020--Hb_002900_120 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_124677_040 Hb_124677_040 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_002965_050 Hb_002965_050 Hb_000156_090--Hb_002965_050 Hb_003018_030 Hb_003018_030 Hb_000156_090--Hb_003018_030 Hb_000156_090--Hb_002900_120 Hb_003428_090 Hb_003428_090 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_003147_060 Hb_003147_060 Hb_003925_040--Hb_003147_060 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_004108_240 Hb_004108_240 Hb_003925_040--Hb_004108_240 Hb_026048_110 Hb_026048_110 Hb_010872_070--Hb_026048_110 Hb_002333_070 Hb_002333_070 Hb_010872_070--Hb_002333_070 Hb_010872_070--Hb_000656_390 Hb_013241_010 Hb_013241_010 Hb_010872_070--Hb_013241_010 Hb_007810_010 Hb_007810_010 Hb_010872_070--Hb_007810_010 Hb_000951_130 Hb_000951_130 Hb_000656_390--Hb_000951_130 Hb_006970_050 Hb_006970_050 Hb_000656_390--Hb_006970_050 Hb_009288_010 Hb_009288_010 Hb_000656_390--Hb_009288_010 Hb_001723_100 Hb_001723_100 Hb_000656_390--Hb_001723_100 Hb_000152_330 Hb_000152_330 Hb_000656_390--Hb_000152_330 Hb_002272_030 Hb_002272_030 Hb_000656_390--Hb_002272_030 Hb_005146_080 Hb_005146_080 Hb_171900_020--Hb_005146_080 Hb_004117_170 Hb_004117_170 Hb_171900_020--Hb_004117_170 Hb_171900_020--Hb_003925_040 Hb_001235_170 Hb_001235_170 Hb_171900_020--Hb_001235_170 Hb_002053_130 Hb_002053_130 Hb_171900_020--Hb_002053_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45516 7.11383 5.70771 4.09854 0.973434 1.03536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96511 3.44728 3.43331 2.41708 2.38121

CAGE analysis