Hb_002042_200

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2042: 187536-189194
Sequence    

Annotation

kegg
ID rcu:RCOM_1430620
description DNA binding protein, putative
nr
ID XP_002512342.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SK91
description Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2
trembl
ID B9RF23
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1430620 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh94-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20961: 187478-189192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_200 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_001623_400 0.0791566136 - - conserved hypothetical protein [Ricinus communis]
3 Hb_018133_110 0.0965818234 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_000175_480 0.0967114002 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
5 Hb_027634_010 0.0983454877 - - protein binding protein, putative [Ricinus communis]
6 Hb_017491_040 0.1063830123 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
7 Hb_001959_030 0.1094780755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003734_120 0.1118906542 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
9 Hb_004021_100 0.116781972 - - -
10 Hb_001369_620 0.1273463802 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
11 Hb_002301_420 0.1308266479 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
12 Hb_000276_030 0.1323780328 - - dimethylaniline monooxygenase, putative [Ricinus communis]
13 Hb_000347_230 0.1348850451 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
14 Hb_002232_400 0.1394815185 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
15 Hb_008705_040 0.1426895695 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_025254_020 0.1429314448 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
17 Hb_004122_030 0.1434276992 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
18 Hb_000032_560 0.1462216418 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
19 Hb_001405_100 0.1479353581 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
20 Hb_003805_080 0.1490795801 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_002042_200 Hb_002042_200 Hb_001623_400 Hb_001623_400 Hb_002042_200--Hb_001623_400 Hb_018133_110 Hb_018133_110 Hb_002042_200--Hb_018133_110 Hb_000175_480 Hb_000175_480 Hb_002042_200--Hb_000175_480 Hb_027634_010 Hb_027634_010 Hb_002042_200--Hb_027634_010 Hb_017491_040 Hb_017491_040 Hb_002042_200--Hb_017491_040 Hb_001959_030 Hb_001959_030 Hb_002042_200--Hb_001959_030 Hb_003064_010 Hb_003064_010 Hb_001623_400--Hb_003064_010 Hb_000347_230 Hb_000347_230 Hb_001623_400--Hb_000347_230 Hb_004021_100 Hb_004021_100 Hb_001623_400--Hb_004021_100 Hb_003734_120 Hb_003734_120 Hb_001623_400--Hb_003734_120 Hb_001623_400--Hb_017491_040 Hb_000032_560 Hb_000032_560 Hb_018133_110--Hb_000032_560 Hb_018133_110--Hb_000347_230 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_018133_110--Hb_003734_120 Hb_000175_480--Hb_027634_010 Hb_000441_170 Hb_000441_170 Hb_000175_480--Hb_000441_170 Hb_002232_400 Hb_002232_400 Hb_000175_480--Hb_002232_400 Hb_002900_070 Hb_002900_070 Hb_000175_480--Hb_002900_070 Hb_098795_010 Hb_098795_010 Hb_000175_480--Hb_098795_010 Hb_027634_010--Hb_001623_400 Hb_027634_010--Hb_018133_110 Hb_027634_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_027634_010--Hb_004122_030 Hb_017491_040--Hb_004021_100 Hb_008705_040 Hb_008705_040 Hb_017491_040--Hb_008705_040 Hb_004452_080 Hb_004452_080 Hb_017491_040--Hb_004452_080 Hb_166813_010 Hb_166813_010 Hb_017491_040--Hb_166813_010 Hb_025254_020 Hb_025254_020 Hb_001959_030--Hb_025254_020 Hb_002016_020 Hb_002016_020 Hb_001959_030--Hb_002016_020 Hb_001959_030--Hb_018133_110 Hb_001369_620 Hb_001369_620 Hb_001959_030--Hb_001369_620 Hb_001959_030--Hb_000175_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12339 18.6221 9.69664 33.6342 0.46466 0.118501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 94.1889 0.883098

CAGE analysis