Hb_002042_220

Information

Type -
Description -
Location Contig2042: 197708-200711
Sequence    

Annotation

kegg
ID rcu:RCOM_1430490
description Kinesin heavy chain, putative
nr
ID XP_002512339.1
description Kinesin heavy chain, putative [Ricinus communis]
swissprot
ID F9W301
description Kinesin-1-like protein PSS1 OS=Oryza sativa subsp. japonica GN=PSS1 PE=1 SV=1
trembl
ID B9RF20
description Kinesin-like protein OS=Ricinus communis GN=RCOM_1430490 PE=3 SV=1
Gene Ontology
ID GO:0005488
description kinesin-1-like protein pss1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002042_220 0.0 - - Kinesin heavy chain, putative [Ricinus communis]
2 Hb_000007_290 0.0335277292 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
3 Hb_005474_070 0.0361418596 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
4 Hb_002010_040 0.0364187779 - - -
5 Hb_004197_030 0.0387822111 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
6 Hb_003647_070 0.0425732664 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
7 Hb_000940_120 0.0474985071 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
8 Hb_003058_150 0.0498039252 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
9 Hb_094074_010 0.0609115364 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_002960_180 0.0655649917 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
11 Hb_007534_080 0.069648206 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
12 Hb_099263_010 0.0702745388 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
13 Hb_034299_010 0.0729004229 - - F-box and wd40 domain protein, putative [Ricinus communis]
14 Hb_001140_110 0.0745436132 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
15 Hb_045260_010 0.074962077 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
16 Hb_001051_020 0.0788195795 - - hypothetical protein L484_008044 [Morus notabilis]
17 Hb_001097_110 0.0827121882 - - gibberellin 20-oxidase, putative [Ricinus communis]
18 Hb_003805_110 0.0859057226 - - PREDICTED: laccase-11-like [Jatropha curcas]
19 Hb_042123_010 0.0888053201 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
20 Hb_000363_070 0.0914137164 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002042_220 Hb_002042_220 Hb_000007_290 Hb_000007_290 Hb_002042_220--Hb_000007_290 Hb_005474_070 Hb_005474_070 Hb_002042_220--Hb_005474_070 Hb_002010_040 Hb_002010_040 Hb_002042_220--Hb_002010_040 Hb_004197_030 Hb_004197_030 Hb_002042_220--Hb_004197_030 Hb_003647_070 Hb_003647_070 Hb_002042_220--Hb_003647_070 Hb_000940_120 Hb_000940_120 Hb_002042_220--Hb_000940_120 Hb_000007_290--Hb_002010_040 Hb_000007_290--Hb_003647_070 Hb_000007_290--Hb_005474_070 Hb_045260_010 Hb_045260_010 Hb_000007_290--Hb_045260_010 Hb_099263_010 Hb_099263_010 Hb_000007_290--Hb_099263_010 Hb_005474_070--Hb_003647_070 Hb_003058_150 Hb_003058_150 Hb_005474_070--Hb_003058_150 Hb_005474_070--Hb_002010_040 Hb_007534_080 Hb_007534_080 Hb_005474_070--Hb_007534_080 Hb_002010_040--Hb_003647_070 Hb_002010_040--Hb_045260_010 Hb_002010_040--Hb_099263_010 Hb_004197_030--Hb_000940_120 Hb_094074_010 Hb_094074_010 Hb_004197_030--Hb_094074_010 Hb_004197_030--Hb_003058_150 Hb_004197_030--Hb_005474_070 Hb_004197_030--Hb_000007_290 Hb_003647_070--Hb_045260_010 Hb_003647_070--Hb_007534_080 Hb_000940_120--Hb_003058_150 Hb_001140_110 Hb_001140_110 Hb_000940_120--Hb_001140_110 Hb_000940_120--Hb_005474_070 Hb_000940_120--Hb_003647_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0270299 0.0953279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.364197

CAGE analysis