Hb_002043_030

Information

Type -
Description -
Location Contig2043: 63118-69212
Sequence    

Annotation

kegg
ID rcu:RCOM_1486170
description hypothetical protein
nr
ID XP_002515898.1
description hypothetical protein RCOM_1486170 [Ricinus communis]
swissprot
ID O82804
description Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1
trembl
ID B9RQ79
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1486170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20968: 62854-63041 , PASA_asmbl_20969: 63120-68948 , PASA_asmbl_20970: 63120-63644 , PASA_asmbl_20971: 63231-63415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_030 0.0 - - hypothetical protein RCOM_1486170 [Ricinus communis]
2 Hb_007810_010 0.0899221413 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
3 Hb_002311_360 0.0959019579 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
4 Hb_092462_020 0.1031655773 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
5 Hb_000309_130 0.1059540113 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
6 Hb_003038_240 0.1083969072 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002704_070 0.1091335374 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
8 Hb_003124_150 0.1095310014 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
9 Hb_010368_010 0.1104958772 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
10 Hb_000008_440 0.1120381632 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
11 Hb_000230_500 0.112779838 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
12 Hb_002217_020 0.1143355559 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
13 Hb_001635_190 0.1156735508 - - RNA m5u methyltransferase, putative [Ricinus communis]
14 Hb_181729_010 0.1162484477 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
15 Hb_003657_010 0.1185497496 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004223_030 0.1186730198 - - PREDICTED: uncharacterized protein LOC105635347 isoform X1 [Jatropha curcas]
17 Hb_009904_010 0.1209969301 - - hypothetical protein JCGZ_16885 [Jatropha curcas]
18 Hb_001287_040 0.1216275237 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
19 Hb_002799_070 0.1227177208 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
20 Hb_001541_120 0.1236004307 - - hypothetical protein JCGZ_17842 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_030 Hb_002043_030 Hb_007810_010 Hb_007810_010 Hb_002043_030--Hb_007810_010 Hb_002311_360 Hb_002311_360 Hb_002043_030--Hb_002311_360 Hb_092462_020 Hb_092462_020 Hb_002043_030--Hb_092462_020 Hb_000309_130 Hb_000309_130 Hb_002043_030--Hb_000309_130 Hb_003038_240 Hb_003038_240 Hb_002043_030--Hb_003038_240 Hb_002704_070 Hb_002704_070 Hb_002043_030--Hb_002704_070 Hb_004218_020 Hb_004218_020 Hb_007810_010--Hb_004218_020 Hb_000008_440 Hb_000008_440 Hb_007810_010--Hb_000008_440 Hb_003657_010 Hb_003657_010 Hb_007810_010--Hb_003657_010 Hb_000120_640 Hb_000120_640 Hb_007810_010--Hb_000120_640 Hb_001541_070 Hb_001541_070 Hb_007810_010--Hb_001541_070 Hb_002311_360--Hb_002704_070 Hb_000856_010 Hb_000856_010 Hb_002311_360--Hb_000856_010 Hb_009803_050 Hb_009803_050 Hb_002311_360--Hb_009803_050 Hb_000928_070 Hb_000928_070 Hb_002311_360--Hb_000928_070 Hb_002311_360--Hb_000309_130 Hb_002311_360--Hb_000008_440 Hb_002184_110 Hb_002184_110 Hb_092462_020--Hb_002184_110 Hb_004724_270 Hb_004724_270 Hb_092462_020--Hb_004724_270 Hb_000729_030 Hb_000729_030 Hb_092462_020--Hb_000729_030 Hb_000010_190 Hb_000010_190 Hb_092462_020--Hb_000010_190 Hb_000161_130 Hb_000161_130 Hb_092462_020--Hb_000161_130 Hb_000733_180 Hb_000733_180 Hb_000309_130--Hb_000733_180 Hb_003124_150 Hb_003124_150 Hb_000309_130--Hb_003124_150 Hb_000309_130--Hb_000928_070 Hb_022250_060 Hb_022250_060 Hb_000309_130--Hb_022250_060 Hb_001019_100 Hb_001019_100 Hb_000309_130--Hb_001019_100 Hb_000221_190 Hb_000221_190 Hb_000309_130--Hb_000221_190 Hb_012114_070 Hb_012114_070 Hb_003038_240--Hb_012114_070 Hb_005162_060 Hb_005162_060 Hb_003038_240--Hb_005162_060 Hb_003038_240--Hb_003124_150 Hb_158445_010 Hb_158445_010 Hb_003038_240--Hb_158445_010 Hb_003038_240--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_003038_240--Hb_000336_150 Hb_000230_500 Hb_000230_500 Hb_002704_070--Hb_000230_500 Hb_002704_070--Hb_009803_050 Hb_030565_030 Hb_030565_030 Hb_002704_070--Hb_030565_030 Hb_002988_040 Hb_002988_040 Hb_002704_070--Hb_002988_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.06582 12.1562 11.3155 6.22907 4.27546 4.86712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7058 11.5617 16.0062 5.64079 13.035

CAGE analysis