Hb_002043_120

Information

Type -
Description -
Location Contig2043: 136765-138544
Sequence    

Annotation

kegg
ID rcu:RCOM_1485730
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002515886.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q05737
description GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
trembl
ID B9RQ67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1485730 PE=3 SV=1
Gene Ontology
ID GO:0005622
description gtp-binding protein yptm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20980: 137964-138731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_120 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_012022_100 0.1215794691 - - CPRD49 family protein [Populus trichocarpa]
3 Hb_002704_050 0.1581197806 - - cysteine-type peptidase, putative [Ricinus communis]
4 Hb_000792_120 0.1707194566 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
5 Hb_000592_060 0.1720425691 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
6 Hb_000613_160 0.1881906377 - - coated vesicle membrane protein, putative [Ricinus communis]
7 Hb_001579_140 0.1992169031 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
8 Hb_000453_300 0.1992307058 - - latex cystatin [Hevea brasiliensis]
9 Hb_003226_240 0.202706829 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
10 Hb_178968_170 0.2050378993 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
11 Hb_001425_070 0.2050648856 - - -
12 Hb_003211_050 0.2056104307 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
13 Hb_008066_030 0.211516796 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
14 Hb_000167_030 0.2116366837 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
15 Hb_011909_110 0.2123197359 - - PREDICTED: uncharacterized protein LOC105633210 [Jatropha curcas]
16 Hb_034482_040 0.213910971 - - aspartate kinase, partial [Francisella tularensis]
17 Hb_001433_100 0.2174265637 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
18 Hb_002326_170 0.2174450531 - - Protein Z, putative [Ricinus communis]
19 Hb_003702_080 0.2191038614 - - cysteine protease, putative [Ricinus communis]
20 Hb_009838_040 0.2194397782 - - hypothetical protein JCGZ_12866 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_120 Hb_002043_120 Hb_012022_100 Hb_012022_100 Hb_002043_120--Hb_012022_100 Hb_002704_050 Hb_002704_050 Hb_002043_120--Hb_002704_050 Hb_000792_120 Hb_000792_120 Hb_002043_120--Hb_000792_120 Hb_000592_060 Hb_000592_060 Hb_002043_120--Hb_000592_060 Hb_000613_160 Hb_000613_160 Hb_002043_120--Hb_000613_160 Hb_001579_140 Hb_001579_140 Hb_002043_120--Hb_001579_140 Hb_012022_100--Hb_000792_120 Hb_012022_100--Hb_002704_050 Hb_003226_240 Hb_003226_240 Hb_012022_100--Hb_003226_240 Hb_000329_660 Hb_000329_660 Hb_012022_100--Hb_000329_660 Hb_001373_100 Hb_001373_100 Hb_012022_100--Hb_001373_100 Hb_002704_050--Hb_000592_060 Hb_002704_050--Hb_000613_160 Hb_000788_080 Hb_000788_080 Hb_002704_050--Hb_000788_080 Hb_089100_030 Hb_089100_030 Hb_002704_050--Hb_089100_030 Hb_000792_120--Hb_001579_140 Hb_000300_210 Hb_000300_210 Hb_000792_120--Hb_000300_210 Hb_000792_120--Hb_000329_660 Hb_000387_060 Hb_000387_060 Hb_000792_120--Hb_000387_060 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030 Hb_000431_160 Hb_000431_160 Hb_000592_060--Hb_000431_160 Hb_000318_490 Hb_000318_490 Hb_000592_060--Hb_000318_490 Hb_000103_550 Hb_000103_550 Hb_000592_060--Hb_000103_550 Hb_000281_230 Hb_000281_230 Hb_000592_060--Hb_000281_230 Hb_004545_130 Hb_004545_130 Hb_000592_060--Hb_004545_130 Hb_000613_160--Hb_000788_080 Hb_005000_160 Hb_005000_160 Hb_000613_160--Hb_005000_160 Hb_001507_070 Hb_001507_070 Hb_000613_160--Hb_001507_070 Hb_001276_060 Hb_001276_060 Hb_000613_160--Hb_001276_060 Hb_000979_250 Hb_000979_250 Hb_000613_160--Hb_000979_250 Hb_001579_140--Hb_000613_160 Hb_012239_100 Hb_012239_100 Hb_001579_140--Hb_012239_100 Hb_001579_140--Hb_005000_160 Hb_009838_040 Hb_009838_040 Hb_001579_140--Hb_009838_040 Hb_000749_240 Hb_000749_240 Hb_001579_140--Hb_000749_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.083942 0.0428867 0.0638283 1.05231 0.0422288 0.135703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.23067 6.73338 2.95467 0.470007 0

CAGE analysis