Hb_002043_130

Information

Type -
Description -
Location Contig2043: 139194-141939
Sequence    

Annotation

kegg
ID rcu:RCOM_1485620
description 60S ribosomal protein L28, putative
nr
ID XP_012069027.1
description PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
swissprot
ID Q9M0E2
description 60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1
trembl
ID A0A067L0R7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24807 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l28-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20981: 139852-141895 , PASA_asmbl_20982: 138892-140088 , PASA_asmbl_20983: 140018-140478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_130 0.0 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
2 Hb_000172_320 0.06703282 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
3 Hb_001814_050 0.0715302582 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_010068_020 0.0722188385 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
5 Hb_009793_010 0.074765111 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
6 Hb_004375_100 0.0759830173 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
7 Hb_011150_010 0.0828036012 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
8 Hb_004157_030 0.0852310721 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_000610_050 0.0869083769 - - skp1, putative [Ricinus communis]
10 Hb_003780_030 0.0877217458 - - PREDICTED: protein CMSS1 [Jatropha curcas]
11 Hb_002893_050 0.0905479347 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
12 Hb_004767_080 0.0921161863 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
13 Hb_033834_040 0.0932765124 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010423_040 0.0934218929 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
15 Hb_005305_150 0.0953899388 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
16 Hb_002890_140 0.0956650138 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
17 Hb_000342_100 0.0966060183 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
18 Hb_002056_050 0.0966979951 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
19 Hb_000373_120 0.0979402728 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
20 Hb_004032_010 0.0984881747 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_130 Hb_002043_130 Hb_000172_320 Hb_000172_320 Hb_002043_130--Hb_000172_320 Hb_001814_050 Hb_001814_050 Hb_002043_130--Hb_001814_050 Hb_010068_020 Hb_010068_020 Hb_002043_130--Hb_010068_020 Hb_009793_010 Hb_009793_010 Hb_002043_130--Hb_009793_010 Hb_004375_100 Hb_004375_100 Hb_002043_130--Hb_004375_100 Hb_011150_010 Hb_011150_010 Hb_002043_130--Hb_011150_010 Hb_002056_050 Hb_002056_050 Hb_000172_320--Hb_002056_050 Hb_000920_110 Hb_000920_110 Hb_000172_320--Hb_000920_110 Hb_002078_140 Hb_002078_140 Hb_000172_320--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_000172_320--Hb_011671_100 Hb_015279_010 Hb_015279_010 Hb_000172_320--Hb_015279_010 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_001814_050--Hb_004375_100 Hb_004157_030 Hb_004157_030 Hb_001814_050--Hb_004157_030 Hb_001814_050--Hb_009793_010 Hb_001505_020 Hb_001505_020 Hb_001814_050--Hb_001505_020 Hb_010068_020--Hb_004375_100 Hb_010068_020--Hb_002056_050 Hb_000384_100 Hb_000384_100 Hb_010068_020--Hb_000384_100 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_010068_020--Hb_004157_030 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_002713_070 Hb_002713_070 Hb_004375_100--Hb_002713_070 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_004375_100--Hb_001505_020 Hb_011150_010--Hb_002701_240 Hb_011150_010--Hb_004375_100 Hb_033834_040 Hb_033834_040 Hb_011150_010--Hb_033834_040 Hb_011150_010--Hb_010068_020 Hb_000270_370 Hb_000270_370 Hb_011150_010--Hb_000270_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.384 46.4294 64.2894 111.291 107.909 131.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.634 288.293 91.3319 143.091 59.6187

CAGE analysis