Hb_002043_140

Information

Type -
Description -
Location Contig2043: 143584-150085
Sequence    

Annotation

kegg
ID rcu:RCOM_1485610
description hypothetical protein
nr
ID XP_012069023.1
description PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
swissprot
ID P59278
description Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2
trembl
ID A0A067KXF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24806 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20984: 143767-150071 , PASA_asmbl_20985: 149051-149192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_140 0.0 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
2 Hb_000976_210 0.0543900413 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
3 Hb_011491_010 0.0650101557 - - Protein YME1, putative [Ricinus communis]
4 Hb_002006_040 0.0653606184 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
5 Hb_008103_060 0.0680337669 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
6 Hb_007163_120 0.0681711569 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
7 Hb_009615_170 0.0696596145 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
8 Hb_000317_370 0.0696993407 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
9 Hb_000070_080 0.0698030143 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
10 Hb_002890_090 0.0700853962 - - Auxin response factor 1 [Glycine soja]
11 Hb_003370_030 0.0711356259 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
12 Hb_000479_220 0.0712867905 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
13 Hb_000345_140 0.0716630466 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
14 Hb_001005_190 0.0717709583 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
15 Hb_000977_120 0.0729164469 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
16 Hb_003785_040 0.0749747324 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
17 Hb_002615_090 0.0750507283 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
18 Hb_002636_100 0.076115349 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
19 Hb_002111_070 0.0761837375 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
20 Hb_000243_250 0.0765238692 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_140 Hb_002043_140 Hb_000976_210 Hb_000976_210 Hb_002043_140--Hb_000976_210 Hb_011491_010 Hb_011491_010 Hb_002043_140--Hb_011491_010 Hb_002006_040 Hb_002006_040 Hb_002043_140--Hb_002006_040 Hb_008103_060 Hb_008103_060 Hb_002043_140--Hb_008103_060 Hb_007163_120 Hb_007163_120 Hb_002043_140--Hb_007163_120 Hb_009615_170 Hb_009615_170 Hb_002043_140--Hb_009615_170 Hb_003082_010 Hb_003082_010 Hb_000976_210--Hb_003082_010 Hb_000976_210--Hb_002006_040 Hb_002217_170 Hb_002217_170 Hb_000976_210--Hb_002217_170 Hb_000317_370 Hb_000317_370 Hb_000976_210--Hb_000317_370 Hb_002890_090 Hb_002890_090 Hb_000976_210--Hb_002890_090 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_023226_080 Hb_023226_080 Hb_002006_040--Hb_023226_080 Hb_003729_030 Hb_003729_030 Hb_002006_040--Hb_003729_030 Hb_000402_230 Hb_000402_230 Hb_002006_040--Hb_000402_230 Hb_002006_040--Hb_009615_170 Hb_000070_080 Hb_000070_080 Hb_008103_060--Hb_000070_080 Hb_140049_040 Hb_140049_040 Hb_008103_060--Hb_140049_040 Hb_007635_030 Hb_007635_030 Hb_008103_060--Hb_007635_030 Hb_004195_200 Hb_004195_200 Hb_008103_060--Hb_004195_200 Hb_002876_130 Hb_002876_130 Hb_008103_060--Hb_002876_130 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5015 25.6072 9.65378 11.9563 16.7234 15.0933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.28588 11.9091 16.3798 15.0479 10.2164

CAGE analysis