Hb_002043_170

Information

Type -
Description -
Location Contig2043: 166718-175745
Sequence    

Annotation

kegg
ID tcc:TCM_028998
description Dentin sialophosphoprotein-related, putative isoform 1
nr
ID XP_012069019.1
description PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24803 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20987: 166621-175553 , PASA_asmbl_20988: 174896-175023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_170 0.0 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
2 Hb_001437_100 0.0470555491 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
3 Hb_000640_320 0.0559485088 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
4 Hb_046615_020 0.0560781134 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
5 Hb_002883_010 0.0567306645 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
6 Hb_000035_040 0.0611339113 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
7 Hb_000335_010 0.0659388157 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000300_580 0.0688588889 - - PREDICTED: importin-5-like [Jatropha curcas]
9 Hb_008143_030 0.0697557075 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
10 Hb_000096_180 0.0711663651 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_031754_010 0.0721094803 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
12 Hb_000714_050 0.072188191 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
13 Hb_000317_440 0.0772602253 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
14 Hb_002652_040 0.0805285584 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_000250_070 0.0808482045 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
16 Hb_002291_070 0.0811682123 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
17 Hb_001975_020 0.0815510217 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
18 Hb_000230_370 0.0820136397 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
19 Hb_000531_090 0.0833085213 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
20 Hb_000424_010 0.0835396254 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_170 Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_002043_170--Hb_001437_100 Hb_000640_320 Hb_000640_320 Hb_002043_170--Hb_000640_320 Hb_046615_020 Hb_046615_020 Hb_002043_170--Hb_046615_020 Hb_002883_010 Hb_002883_010 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_000335_010 Hb_000335_010 Hb_002043_170--Hb_000335_010 Hb_001437_100--Hb_002883_010 Hb_000317_440 Hb_000317_440 Hb_001437_100--Hb_000317_440 Hb_000300_580 Hb_000300_580 Hb_001437_100--Hb_000300_580 Hb_001437_100--Hb_000335_010 Hb_000096_180 Hb_000096_180 Hb_001437_100--Hb_000096_180 Hb_108216_040 Hb_108216_040 Hb_000640_320--Hb_108216_040 Hb_008143_030 Hb_008143_030 Hb_000640_320--Hb_008143_030 Hb_000714_050 Hb_000714_050 Hb_000640_320--Hb_000714_050 Hb_002400_180 Hb_002400_180 Hb_000640_320--Hb_002400_180 Hb_000343_210 Hb_000343_210 Hb_000640_320--Hb_000343_210 Hb_001975_020 Hb_001975_020 Hb_046615_020--Hb_001975_020 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_002883_010--Hb_000317_440 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_000035_040--Hb_002652_040 Hb_000424_010 Hb_000424_010 Hb_000035_040--Hb_000424_010 Hb_000035_040--Hb_031754_010 Hb_000331_190 Hb_000331_190 Hb_000035_040--Hb_000331_190 Hb_000035_040--Hb_000531_090 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_000335_010--Hb_002883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.4987 12.6211 7.03814 4.96026 29.8016 31.2557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.253 6.34718 9.71126 10.1442 11.8417

CAGE analysis