Hb_002043_180

Information

Type -
Description -
Location Contig2043: 177147-188187
Sequence    

Annotation

kegg
ID rcu:RCOM_1485390
description glutamate dehydrogenase, putative (EC:1.4.1.4)
nr
ID XP_012069020.1
description PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
swissprot
ID P28724
description NADP-specific glutamate dehydrogenase OS=Giardia intestinalis PE=2 SV=1
trembl
ID A0A067L8I6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24804 PE=3 SV=1
Gene Ontology
ID GO:0016491
description nadp-specific glutamate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20989: 185317-186146 , PASA_asmbl_20990: 178586-188108 , PASA_asmbl_20991: 186774-186930 , PASA_asmbl_20993: 180502-180808 , PASA_asmbl_20994: 179815-180041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_180 0.0 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
2 Hb_000768_050 0.1011691418 - - hypothetical protein RCOM_0845740 [Ricinus communis]
3 Hb_005883_030 0.1099421753 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
4 Hb_000000_080 0.110447272 - - lipoate-protein ligase B, putative [Ricinus communis]
5 Hb_001158_040 0.1147316733 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
6 Hb_002272_250 0.1148917127 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000265_150 0.1155083227 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
8 Hb_004137_030 0.1158373755 - - conserved hypothetical protein [Ricinus communis]
9 Hb_168918_020 0.1160358015 - - pectin acetylesterase, putative [Ricinus communis]
10 Hb_002553_020 0.1161786057 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019962_030 0.1168788475 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
12 Hb_010449_020 0.1176119546 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
13 Hb_150069_020 0.1176595626 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
14 Hb_000107_390 0.1180870095 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
15 Hb_000120_240 0.1188405713 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
16 Hb_002968_060 0.1188555057 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
17 Hb_010128_130 0.1189808978 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
18 Hb_002681_040 0.1191721144 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
19 Hb_000085_270 0.1224593475 - - PREDICTED: pirin-like protein [Malus domestica]
20 Hb_076787_010 0.1228417791 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002043_180 Hb_002043_180 Hb_000768_050 Hb_000768_050 Hb_002043_180--Hb_000768_050 Hb_005883_030 Hb_005883_030 Hb_002043_180--Hb_005883_030 Hb_000000_080 Hb_000000_080 Hb_002043_180--Hb_000000_080 Hb_001158_040 Hb_001158_040 Hb_002043_180--Hb_001158_040 Hb_002272_250 Hb_002272_250 Hb_002043_180--Hb_002272_250 Hb_000265_150 Hb_000265_150 Hb_002043_180--Hb_000265_150 Hb_010449_020 Hb_010449_020 Hb_000768_050--Hb_010449_020 Hb_002495_070 Hb_002495_070 Hb_000768_050--Hb_002495_070 Hb_003106_070 Hb_003106_070 Hb_000768_050--Hb_003106_070 Hb_000768_050--Hb_000265_150 Hb_003688_100 Hb_003688_100 Hb_000768_050--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_000768_050--Hb_004722_060 Hb_000030_010 Hb_000030_010 Hb_005883_030--Hb_000030_010 Hb_005062_070 Hb_005062_070 Hb_005883_030--Hb_005062_070 Hb_004751_020 Hb_004751_020 Hb_005883_030--Hb_004751_020 Hb_005883_030--Hb_000000_080 Hb_000015_080 Hb_000015_080 Hb_005883_030--Hb_000015_080 Hb_010795_010 Hb_010795_010 Hb_005883_030--Hb_010795_010 Hb_006065_020 Hb_006065_020 Hb_000000_080--Hb_006065_020 Hb_001439_150 Hb_001439_150 Hb_000000_080--Hb_001439_150 Hb_168707_030 Hb_168707_030 Hb_000000_080--Hb_168707_030 Hb_000000_080--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000000_080--Hb_000017_120 Hb_007951_060 Hb_007951_060 Hb_000000_080--Hb_007951_060 Hb_001158_040--Hb_000265_150 Hb_004241_070 Hb_004241_070 Hb_001158_040--Hb_004241_070 Hb_000529_080 Hb_000529_080 Hb_001158_040--Hb_000529_080 Hb_000879_140 Hb_000879_140 Hb_001158_040--Hb_000879_140 Hb_000699_130 Hb_000699_130 Hb_001158_040--Hb_000699_130 Hb_150069_020 Hb_150069_020 Hb_001158_040--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_002272_250--Hb_000017_120 Hb_002272_250--Hb_150069_020 Hb_000205_120 Hb_000205_120 Hb_000265_150--Hb_000205_120 Hb_012305_070 Hb_012305_070 Hb_000265_150--Hb_012305_070 Hb_000265_150--Hb_004722_060 Hb_000265_150--Hb_000529_080 Hb_008406_160 Hb_008406_160 Hb_000265_150--Hb_008406_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.597 20.9597 16.2378 14.7473 51.7243 47.8588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.0949 59.8068 35.1203 13.9574 18.5105

CAGE analysis