Hb_002043_190

Information

Type -
Description -
Location Contig2043: 188366-199462
Sequence    

Annotation

kegg
ID rcu:RCOM_1485400
description rwd domain-containing protein, putative
nr
ID XP_002515883.1
description rwd domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9CQK7
description RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1
trembl
ID B9RQ64
description Rwd domain-containing protein, putative OS=Ricinus communis GN=RCOM_1485400 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rwd domain-containing protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20996: 188383-198891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_190 0.0 - - rwd domain-containing protein, putative [Ricinus communis]
2 Hb_005993_040 0.0498955332 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
3 Hb_015746_010 0.0545508871 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
4 Hb_002081_130 0.0578370777 - - serine carboxypeptidase, putative [Ricinus communis]
5 Hb_003126_050 0.0660168667 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
6 Hb_002233_150 0.0660802827 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
7 Hb_000041_270 0.0696399817 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
8 Hb_000926_280 0.0714039526 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
9 Hb_000853_170 0.0723409418 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
10 Hb_010661_030 0.0726367001 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
11 Hb_011689_080 0.0727217417 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
12 Hb_000640_240 0.0729698659 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
13 Hb_001489_060 0.073403749 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
14 Hb_000019_210 0.073806756 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
15 Hb_000327_120 0.0741568584 - - FGFR1 oncogene partner, putative [Ricinus communis]
16 Hb_001404_100 0.0746850732 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
17 Hb_001811_050 0.0747236489 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
18 Hb_003417_020 0.0747562607 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
19 Hb_007576_040 0.0751715868 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
20 Hb_096563_010 0.0754387512 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]

Gene co-expression network

sample Hb_002043_190 Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_002043_190--Hb_005993_040 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_000327_120 Hb_000327_120 Hb_015746_010--Hb_000327_120 Hb_004048_070 Hb_004048_070 Hb_015746_010--Hb_004048_070 Hb_000853_170 Hb_000853_170 Hb_015746_010--Hb_000853_170 Hb_001571_040 Hb_001571_040 Hb_015746_010--Hb_001571_040 Hb_000061_370 Hb_000061_370 Hb_015746_010--Hb_000061_370 Hb_066182_010 Hb_066182_010 Hb_002081_130--Hb_066182_010 Hb_000300_060 Hb_000300_060 Hb_002081_130--Hb_000300_060 Hb_003025_020 Hb_003025_020 Hb_002081_130--Hb_003025_020 Hb_002081_130--Hb_005993_040 Hb_002391_300 Hb_002391_300 Hb_002081_130--Hb_002391_300 Hb_003417_020 Hb_003417_020 Hb_003126_050--Hb_003417_020 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_007691_030 Hb_007691_030 Hb_003126_050--Hb_007691_030 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_000041_270--Hb_096563_010 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_001481_090 Hb_001481_090 Hb_000041_270--Hb_001481_090 Hb_004491_010 Hb_004491_010 Hb_000041_270--Hb_004491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.4248 19.7346 27.9773 21.6201 52.6379 49.7152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.5118 62.3819 36.74 37.3728 16.3566

CAGE analysis