Hb_002044_080

Information

Type -
Description -
Location Contig2044: 92491-94817
Sequence    

Annotation

kegg
ID rcu:RCOM_1211490
description cell cycle regulatory protein, putative
nr
ID XP_012084070.1
description PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067LLD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15034 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21004: 92643-94701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_080 0.0 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
2 Hb_000056_200 0.0604005091 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
3 Hb_058999_020 0.0604408654 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
4 Hb_006502_090 0.062940599 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
5 Hb_001242_060 0.0654763996 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
6 Hb_000120_790 0.067345649 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
7 Hb_000085_050 0.0680613109 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_002183_090 0.068071737 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
9 Hb_000920_180 0.0691649453 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
10 Hb_001545_120 0.0697180405 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
11 Hb_000170_210 0.0697748946 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002027_250 0.0739369302 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000465_460 0.0763594908 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
14 Hb_000777_040 0.07676641 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_009838_080 0.0771067455 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_000227_080 0.0775921109 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005779_060 0.0786256278 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
18 Hb_017358_030 0.0795188188 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
19 Hb_044728_010 0.0796489874 - - -
20 Hb_002609_020 0.0796919463 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]

Gene co-expression network

sample Hb_002044_080 Hb_002044_080 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_006502_090 Hb_006502_090 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_000757_060 Hb_000757_060 Hb_058999_020--Hb_000757_060 Hb_005779_060 Hb_005779_060 Hb_058999_020--Hb_005779_060 Hb_000227_080 Hb_000227_080 Hb_058999_020--Hb_000227_080 Hb_000215_110 Hb_000215_110 Hb_058999_020--Hb_000215_110 Hb_000465_460 Hb_000465_460 Hb_058999_020--Hb_000465_460 Hb_001545_120 Hb_001545_120 Hb_006502_090--Hb_001545_120 Hb_013607_030 Hb_013607_030 Hb_006502_090--Hb_013607_030 Hb_007632_030 Hb_007632_030 Hb_006502_090--Hb_007632_030 Hb_017904_010 Hb_017904_010 Hb_006502_090--Hb_017904_010 Hb_006502_090--Hb_000120_790 Hb_031527_040 Hb_031527_040 Hb_001242_060--Hb_031527_040 Hb_001242_060--Hb_000757_060 Hb_000016_250 Hb_000016_250 Hb_001242_060--Hb_000016_250 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_000563_320 Hb_000563_320 Hb_001242_060--Hb_000563_320 Hb_001242_060--Hb_005779_060 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_002183_090 Hb_002183_090 Hb_000085_050--Hb_002183_090 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_000085_050--Hb_058999_020 Hb_000976_170 Hb_000976_170 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.91523 3.96336 4.24816 2.89659 6.50645 8.2994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.98487 10.8713 7.99532 4.60325 5.08137

CAGE analysis