Hb_002044_160

Information

Type -
Description -
Location Contig2044: 163280-167440
Sequence    

Annotation

kegg
ID rcu:RCOM_1211530
description 3-hydroxyisobutyrate dehydrogenase, putative (EC:1.1.1.60)
nr
ID XP_012084135.1
description PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
swissprot
ID Q9LSV0
description Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1
trembl
ID A0A067LLE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15039 PE=4 SV=1
Gene Ontology
ID GO:0003858
description glyoxylate succinic semialdehyde reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21014: 163422-167430
cDNA
(Sanger)
(ID:Location)		 030_F18.ab1: 163541-166424 , 053_C12.ab1: 163532-166490

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_160 0.0 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
2 Hb_158092_100 0.0776342982 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
3 Hb_000454_100 0.0810582032 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_002005_040 0.0876688831 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000579_040 0.0891009779 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
6 Hb_002374_450 0.097428963 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
7 Hb_004055_160 0.1015692192 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
8 Hb_000414_080 0.1021436228 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
9 Hb_003175_070 0.1042295964 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
10 Hb_005116_100 0.1053008161 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
11 Hb_004223_270 0.1059956481 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
12 Hb_001365_030 0.1061069608 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
13 Hb_000441_050 0.1068427906 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
14 Hb_025194_090 0.1068704772 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
15 Hb_148146_010 0.1079261078 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
16 Hb_000516_080 0.1084679697 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
17 Hb_003752_090 0.1087400144 - - chitinase, putative [Ricinus communis]
18 Hb_032631_070 0.1087748946 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
19 Hb_004837_210 0.1119374358 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
20 Hb_009687_020 0.1131802879 - - hypothetical protein JCGZ_10323 [Jatropha curcas]

Gene co-expression network

sample Hb_002044_160 Hb_002044_160 Hb_158092_100 Hb_158092_100 Hb_002044_160--Hb_158092_100 Hb_000454_100 Hb_000454_100 Hb_002044_160--Hb_000454_100 Hb_002005_040 Hb_002005_040 Hb_002044_160--Hb_002005_040 Hb_000579_040 Hb_000579_040 Hb_002044_160--Hb_000579_040 Hb_002374_450 Hb_002374_450 Hb_002044_160--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_002044_160--Hb_004055_160 Hb_009687_020 Hb_009687_020 Hb_158092_100--Hb_009687_020 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_000473_050 Hb_000473_050 Hb_158092_100--Hb_000473_050 Hb_158092_100--Hb_004055_160 Hb_000696_190 Hb_000696_190 Hb_000454_100--Hb_000696_190 Hb_004710_020 Hb_004710_020 Hb_000454_100--Hb_004710_020 Hb_000454_100--Hb_158092_100 Hb_000454_100--Hb_002005_040 Hb_000496_130 Hb_000496_130 Hb_000454_100--Hb_000496_130 Hb_002005_040--Hb_004055_160 Hb_001348_090 Hb_001348_090 Hb_002005_040--Hb_001348_090 Hb_005116_100 Hb_005116_100 Hb_002005_040--Hb_005116_100 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_032631_070 Hb_032631_070 Hb_000579_040--Hb_032631_070 Hb_025194_090 Hb_025194_090 Hb_000579_040--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_000579_040--Hb_002075_030 Hb_138585_030 Hb_138585_030 Hb_000579_040--Hb_138585_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_004055_160--Hb_000684_430 Hb_004055_160--Hb_009687_020 Hb_006829_080 Hb_006829_080 Hb_004055_160--Hb_006829_080 Hb_004055_160--Hb_005116_100 Hb_004055_160--Hb_001348_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3572 29.8526 121.059 72.4229 22.7825 12.1515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9566 11.7382 14.9566 38.8016 156.522

CAGE analysis