Hb_002045_010

Information

Type -
Description -
Location Contig2045: 18035-23102
Sequence    

Annotation

kegg
ID rcu:RCOM_0992050
description F-box/leucine rich repeat protein, putative
nr
ID XP_012092110.1
description PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
swissprot
ID Q8W104
description F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana GN=FBL17 PE=1 SV=1
trembl
ID A0A067JC33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21838 PE=4 SV=1
Gene Ontology
ID GO:0001673
description f-box lrr-repeat protein 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21022: 18204-18588 , PASA_asmbl_21023: 18605-19979 , PASA_asmbl_21024: 21563-23348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_010 0.0 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
2 Hb_002805_180 0.0851052937 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009767_060 0.0895783354 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
4 Hb_000359_180 0.1041918003 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005181_170 0.1043945791 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
6 Hb_000739_170 0.1050474334 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
7 Hb_004330_040 0.1078885707 - - conserved hypothetical protein [Ricinus communis]
8 Hb_032260_060 0.1081539434 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
9 Hb_000297_210 0.1090717098 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
10 Hb_005675_050 0.1095970439 - - alpha-glucosidase, putative [Ricinus communis]
11 Hb_000112_080 0.1096812462 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
12 Hb_004122_010 0.1105954817 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
13 Hb_001104_020 0.1117833169 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000732_220 0.1125623587 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
15 Hb_004592_010 0.113079487 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
16 Hb_019570_010 0.1163358357 - - lyase, putative [Ricinus communis]
17 Hb_008304_010 0.1163445032 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
18 Hb_007290_050 0.1200912469 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
19 Hb_093218_010 0.1251505967 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
20 Hb_000418_170 0.1253810839 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_002045_010 Hb_002045_010 Hb_002805_180 Hb_002805_180 Hb_002045_010--Hb_002805_180 Hb_009767_060 Hb_009767_060 Hb_002045_010--Hb_009767_060 Hb_000359_180 Hb_000359_180 Hb_002045_010--Hb_000359_180 Hb_005181_170 Hb_005181_170 Hb_002045_010--Hb_005181_170 Hb_000739_170 Hb_000739_170 Hb_002045_010--Hb_000739_170 Hb_004330_040 Hb_004330_040 Hb_002045_010--Hb_004330_040 Hb_002805_180--Hb_000359_180 Hb_001437_260 Hb_001437_260 Hb_002805_180--Hb_001437_260 Hb_000732_220 Hb_000732_220 Hb_002805_180--Hb_000732_220 Hb_005144_060 Hb_005144_060 Hb_002805_180--Hb_005144_060 Hb_019570_010 Hb_019570_010 Hb_002805_180--Hb_019570_010 Hb_032572_010 Hb_032572_010 Hb_009767_060--Hb_032572_010 Hb_000303_060 Hb_000303_060 Hb_009767_060--Hb_000303_060 Hb_004122_010 Hb_004122_010 Hb_009767_060--Hb_004122_010 Hb_001396_030 Hb_001396_030 Hb_009767_060--Hb_001396_030 Hb_001287_090 Hb_001287_090 Hb_009767_060--Hb_001287_090 Hb_000359_180--Hb_000732_220 Hb_001310_060 Hb_001310_060 Hb_000359_180--Hb_001310_060 Hb_000077_300 Hb_000077_300 Hb_000359_180--Hb_000077_300 Hb_004832_010 Hb_004832_010 Hb_000359_180--Hb_004832_010 Hb_004592_010 Hb_004592_010 Hb_000359_180--Hb_004592_010 Hb_000112_080 Hb_000112_080 Hb_005181_170--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_005181_170--Hb_007218_040 Hb_000297_210 Hb_000297_210 Hb_005181_170--Hb_000297_210 Hb_001140_300 Hb_001140_300 Hb_005181_170--Hb_001140_300 Hb_005181_170--Hb_004122_010 Hb_005181_170--Hb_001396_030 Hb_005675_050 Hb_005675_050 Hb_000739_170--Hb_005675_050 Hb_000739_170--Hb_004122_010 Hb_000739_170--Hb_002805_180 Hb_008304_010 Hb_008304_010 Hb_000739_170--Hb_008304_010 Hb_000739_170--Hb_004592_010 Hb_032260_060 Hb_032260_060 Hb_004330_040--Hb_032260_060 Hb_001473_060 Hb_001473_060 Hb_004330_040--Hb_001473_060 Hb_003754_020 Hb_003754_020 Hb_004330_040--Hb_003754_020 Hb_004330_040--Hb_005181_170 Hb_000310_110 Hb_000310_110 Hb_004330_040--Hb_000310_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.115949 1.36848 1.28197 0 0.0102974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0190119 0 0.41626 0.601556

CAGE analysis