Hb_002045_040

Information

Type -
Description -
Location Contig2045: 41793-43749
Sequence    

Annotation

kegg
ID sot:102578435
description protein OSB2, chloroplastic-like
nr
ID XP_012092114.1
description PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JC37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21843 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21033: 42629-43235 , PASA_asmbl_21034: 43482-43823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_040 0.0 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_011381_060 0.0763187901 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
3 Hb_000805_120 0.0824422542 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
4 Hb_145880_030 0.0856581029 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
5 Hb_000251_070 0.0915711886 - - hypothetical protein L484_010641 [Morus notabilis]
6 Hb_010407_040 0.0951792079 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
7 Hb_002374_170 0.0957337668 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
8 Hb_000887_020 0.0964040613 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
9 Hb_008686_080 0.0964952065 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
10 Hb_004204_120 0.0975709889 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
11 Hb_000109_090 0.0986108515 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
12 Hb_033594_110 0.0989992462 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
13 Hb_000462_130 0.1004860174 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
14 Hb_181288_010 0.1014493415 - - rac-GTP binding protein, putative [Ricinus communis]
15 Hb_007317_150 0.1015045462 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
16 Hb_000023_230 0.1015335949 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
17 Hb_003749_010 0.1017002185 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002349_040 0.1017391433 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
19 Hb_000630_060 0.1020025764 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
20 Hb_003018_120 0.1020073889 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]

Gene co-expression network

sample Hb_002045_040 Hb_002045_040 Hb_011381_060 Hb_011381_060 Hb_002045_040--Hb_011381_060 Hb_000805_120 Hb_000805_120 Hb_002045_040--Hb_000805_120 Hb_145880_030 Hb_145880_030 Hb_002045_040--Hb_145880_030 Hb_000251_070 Hb_000251_070 Hb_002045_040--Hb_000251_070 Hb_010407_040 Hb_010407_040 Hb_002045_040--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_002045_040--Hb_002374_170 Hb_007154_020 Hb_007154_020 Hb_011381_060--Hb_007154_020 Hb_011381_060--Hb_145880_030 Hb_011381_060--Hb_010407_040 Hb_011381_060--Hb_002374_170 Hb_028841_030 Hb_028841_030 Hb_011381_060--Hb_028841_030 Hb_000805_120--Hb_145880_030 Hb_001662_070 Hb_001662_070 Hb_000805_120--Hb_001662_070 Hb_008686_080 Hb_008686_080 Hb_000805_120--Hb_008686_080 Hb_023226_040 Hb_023226_040 Hb_000805_120--Hb_023226_040 Hb_000805_120--Hb_000251_070 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_145880_030--Hb_023226_040 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_004934_110 Hb_004934_110 Hb_000251_070--Hb_004934_110 Hb_000251_070--Hb_001662_070 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_000251_070--Hb_007154_020 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_000163_160 Hb_000163_160 Hb_010407_040--Hb_000163_160 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_001459_080 Hb_001459_080 Hb_002374_170--Hb_001459_080 Hb_004787_060 Hb_004787_060 Hb_002374_170--Hb_004787_060 Hb_168878_010 Hb_168878_010 Hb_002374_170--Hb_168878_010 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_002374_170--Hb_028841_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.71593 1.13626 2.32882 1.11019 2.44246 1.88179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8702 4.17066 1.40496 1.25101 0.693789

CAGE analysis