Hb_002045_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2045: 51809-57084
Sequence    

Annotation

kegg
ID rcu:RCOM_0991590
description DNA binding protein, putative
nr
ID XP_012092122.1
description PREDICTED: transcription factor UNE12-like [Jatropha curcas]
swissprot
ID O22768
description Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2
trembl
ID A0A067JPB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21845 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor une12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21036: 51703-57025 , PASA_asmbl_21037: 53076-53343 , PASA_asmbl_21038: 51845-57025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_070 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
2 Hb_002301_160 0.0611028112 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
3 Hb_000220_100 0.0682623945 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
4 Hb_004108_220 0.073334301 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
5 Hb_033594_080 0.0743465517 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
6 Hb_000749_050 0.0756615071 - - mitochondrial thioredoxin [Hevea brasiliensis]
7 Hb_000009_290 0.0787615437 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
8 Hb_005653_070 0.0847555684 - - K+ transport growth defect-like protein [Hevea brasiliensis]
9 Hb_000365_270 0.0866732308 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
10 Hb_000359_060 0.0872209549 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
11 Hb_000465_300 0.0881251543 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
12 Hb_000173_410 0.0889529486 - - PREDICTED: BI1-like protein [Jatropha curcas]
13 Hb_007218_120 0.0892433321 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
14 Hb_001489_110 0.0892649031 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
15 Hb_000384_070 0.0895898059 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000110_140 0.0897356361 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
17 Hb_001728_040 0.0901586695 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
18 Hb_004627_030 0.0902116819 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
19 Hb_000608_050 0.0908639022 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
20 Hb_004800_100 0.0933456919 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002045_070 Hb_002045_070 Hb_002301_160 Hb_002301_160 Hb_002045_070--Hb_002301_160 Hb_000220_100 Hb_000220_100 Hb_002045_070--Hb_000220_100 Hb_004108_220 Hb_004108_220 Hb_002045_070--Hb_004108_220 Hb_033594_080 Hb_033594_080 Hb_002045_070--Hb_033594_080 Hb_000749_050 Hb_000749_050 Hb_002045_070--Hb_000749_050 Hb_000009_290 Hb_000009_290 Hb_002045_070--Hb_000009_290 Hb_000110_120 Hb_000110_120 Hb_002301_160--Hb_000110_120 Hb_002301_160--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_002301_160--Hb_004627_030 Hb_002042_150 Hb_002042_150 Hb_002301_160--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_002301_160--Hb_001489_110 Hb_000359_060 Hb_000359_060 Hb_000220_100--Hb_000359_060 Hb_000173_410 Hb_000173_410 Hb_000220_100--Hb_000173_410 Hb_000608_050 Hb_000608_050 Hb_000220_100--Hb_000608_050 Hb_000454_090 Hb_000454_090 Hb_000220_100--Hb_000454_090 Hb_000220_100--Hb_033594_080 Hb_002301_150 Hb_002301_150 Hb_004108_220--Hb_002301_150 Hb_005588_060 Hb_005588_060 Hb_004108_220--Hb_005588_060 Hb_149985_010 Hb_149985_010 Hb_004108_220--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_004108_220--Hb_168978_010 Hb_000365_270 Hb_000365_270 Hb_004108_220--Hb_000365_270 Hb_012022_040 Hb_012022_040 Hb_004108_220--Hb_012022_040 Hb_000890_150 Hb_000890_150 Hb_033594_080--Hb_000890_150 Hb_033594_080--Hb_000359_060 Hb_000215_320 Hb_000215_320 Hb_033594_080--Hb_000215_320 Hb_033594_080--Hb_004108_220 Hb_000465_300 Hb_000465_300 Hb_000749_050--Hb_000465_300 Hb_000173_470 Hb_000173_470 Hb_000749_050--Hb_000173_470 Hb_000749_050--Hb_000890_150 Hb_000749_050--Hb_000215_320 Hb_011218_090 Hb_011218_090 Hb_000749_050--Hb_011218_090 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_000327_380 Hb_000327_380 Hb_000009_290--Hb_000327_380 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_001410_060 Hb_001410_060 Hb_000009_290--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.96356 8.29718 7.48975 16.6425 3.79087 4.76838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.46982 15.2914 10.1606 8.77899 7.22846

CAGE analysis