Hb_002045_090

Information

Type -
Description -
Location Contig2045: 64198-69520
Sequence    

Annotation

kegg
ID rcu:RCOM_0991580
description trytophan synthase alpha subunit, putative (EC:4.2.1.20)
nr
ID XP_012092126.1
description PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
swissprot
ID Q42529
description Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 PE=1 SV=1
trembl
ID A0A067JC03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21847 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase alpha chain-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21039: 64211-69582
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_090 0.0 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
2 Hb_004195_140 0.1110391562 - - Sec14 cytosolic factor, putative [Ricinus communis]
3 Hb_003640_050 0.1205488834 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000958_120 0.1262276642 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
5 Hb_003397_030 0.1290105711 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
6 Hb_001141_050 0.129600025 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
7 Hb_000224_080 0.1299413381 - - hypothetical protein RCOM_0510880 [Ricinus communis]
8 Hb_002078_120 0.1358046311 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
9 Hb_000996_080 0.1410116841 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
10 Hb_082655_010 0.1437050436 - - rhodanese-like domain-containing family protein [Populus trichocarpa]
11 Hb_000000_180 0.145371582 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
12 Hb_004517_030 0.1470177116 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000169_070 0.14796314 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
14 Hb_006130_020 0.149803887 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_000230_190 0.1501006173 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
16 Hb_000792_050 0.1503626358 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000011_560 0.1509242735 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
18 Hb_001922_110 0.1511681921 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000212_250 0.1516810557 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000032_200 0.1523349351 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_002045_090 Hb_002045_090 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_000958_120 Hb_000958_120 Hb_002045_090--Hb_000958_120 Hb_003397_030 Hb_003397_030 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080 Hb_000230_190 Hb_000230_190 Hb_004195_140--Hb_000230_190 Hb_001377_530 Hb_001377_530 Hb_004195_140--Hb_001377_530 Hb_004195_140--Hb_001141_050 Hb_000792_050 Hb_000792_050 Hb_004195_140--Hb_000792_050 Hb_002942_120 Hb_002942_120 Hb_004195_140--Hb_002942_120 Hb_000076_250 Hb_000076_250 Hb_003640_050--Hb_000076_250 Hb_000996_080 Hb_000996_080 Hb_003640_050--Hb_000996_080 Hb_005665_090 Hb_005665_090 Hb_003640_050--Hb_005665_090 Hb_005074_050 Hb_005074_050 Hb_003640_050--Hb_005074_050 Hb_003160_070 Hb_003160_070 Hb_003640_050--Hb_003160_070 Hb_003640_050--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000958_120--Hb_001922_110 Hb_002701_070 Hb_002701_070 Hb_000958_120--Hb_002701_070 Hb_000227_400 Hb_000227_400 Hb_000958_120--Hb_000227_400 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000390_210 Hb_000390_210 Hb_000958_120--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000958_120--Hb_001544_050 Hb_001386_090 Hb_001386_090 Hb_003397_030--Hb_001386_090 Hb_000169_070 Hb_000169_070 Hb_003397_030--Hb_000169_070 Hb_001711_060 Hb_001711_060 Hb_003397_030--Hb_001711_060 Hb_004517_030 Hb_004517_030 Hb_003397_030--Hb_004517_030 Hb_003397_030--Hb_000792_050 Hb_000438_130 Hb_000438_130 Hb_003397_030--Hb_000438_130 Hb_001141_050--Hb_001922_110 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_001141_050--Hb_000076_250 Hb_014320_010 Hb_014320_010 Hb_000224_080--Hb_014320_010 Hb_001123_110 Hb_001123_110 Hb_000224_080--Hb_001123_110 Hb_000224_080--Hb_003397_030 Hb_000224_080--Hb_000958_120 Hb_005271_140 Hb_005271_140 Hb_000224_080--Hb_005271_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2637 15.6142 106.543 42.973 1.4541 6.47459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5122 12.0582 5.50902 7.84228 43.9391

CAGE analysis