Hb_002045_150

Information

Type -
Description -
Location Contig2045: 100165-105593
Sequence    

Annotation

kegg
ID rcu:RCOM_0991560
description histone acetyltransferase gcn5, putative (EC:2.3.1.48)
nr
ID XP_002520973.1
description histone acetyltransferase gcn5, putative [Ricinus communis]
swissprot
ID Q9AR19
description Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1
trembl
ID B9S4R6
description Histone acetyltransferase gcn5, putative OS=Ricinus communis GN=RCOM_0991560 PE=4 SV=1
Gene Ontology
ID GO:0008080
description histone acetyltransferase gcn5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21040: 100719-102791 , PASA_asmbl_21041: 104131-105554
cDNA
(Sanger)
(ID:Location)		 012_E11.ab1: 104131-105541 , 013_I22.ab1: 104894-105551 , 013_M23.ab1: 104133-105541

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_150 0.0 - - histone acetyltransferase gcn5, putative [Ricinus communis]
2 Hb_002157_260 0.0607222558 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
3 Hb_140049_030 0.0637727504 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
4 Hb_050847_020 0.0660723688 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_000771_180 0.0704799302 - - polypyrimidine tract binding protein, putative [Ricinus communis]
6 Hb_000300_360 0.0711469805 - - PREDICTED: exosome component 10 [Jatropha curcas]
7 Hb_006452_160 0.071633372 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_011386_040 0.0734377631 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
9 Hb_000487_420 0.0752223836 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
10 Hb_000270_460 0.0753671301 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
11 Hb_000334_270 0.0818080069 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_005965_030 0.0832571153 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
13 Hb_000160_350 0.0842733315 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
14 Hb_001799_050 0.084953854 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
15 Hb_006658_040 0.0852206757 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
16 Hb_000059_140 0.0865184483 - - rnase h, putative [Ricinus communis]
17 Hb_075745_020 0.0870573212 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
18 Hb_002918_060 0.0873896547 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_001545_200 0.0874986129 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
20 Hb_000406_240 0.0875367355 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002045_150 Hb_002045_150 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_140049_030 Hb_140049_030 Hb_002045_150--Hb_140049_030 Hb_050847_020 Hb_050847_020 Hb_002045_150--Hb_050847_020 Hb_000771_180 Hb_000771_180 Hb_002045_150--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_005965_030 Hb_005965_030 Hb_002157_260--Hb_005965_030 Hb_000160_350 Hb_000160_350 Hb_002157_260--Hb_000160_350 Hb_002157_260--Hb_006452_160 Hb_006960_050 Hb_006960_050 Hb_002157_260--Hb_006960_050 Hb_001408_100 Hb_001408_100 Hb_002157_260--Hb_001408_100 Hb_140049_030--Hb_000771_180 Hb_140049_030--Hb_000300_360 Hb_140049_030--Hb_050847_020 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200 Hb_002783_310 Hb_002783_310 Hb_050847_020--Hb_002783_310 Hb_050847_020--Hb_000771_180 Hb_011386_040 Hb_011386_040 Hb_050847_020--Hb_011386_040 Hb_000136_090 Hb_000136_090 Hb_050847_020--Hb_000136_090 Hb_000771_180--Hb_002783_310 Hb_000771_180--Hb_000160_350 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070 Hb_007982_070 Hb_007982_070 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120 Hb_002739_130 Hb_002739_130 Hb_006452_160--Hb_002739_130 Hb_000563_330 Hb_000563_330 Hb_006452_160--Hb_000563_330 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_016734_090 Hb_016734_090 Hb_006452_160--Hb_016734_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83074 2.92452 2.53258 1.03639 3.69648 3.05114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55581 1.82062 0.776019 1.92128 1.0647

CAGE analysis