Hb_002045_210

Information

Type -
Description -
Location Contig2045: 180752-185042
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04750g
description POPTRDRAFT_754257; hypothetical protein
nr
ID XP_012092138.1
description PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
swissprot
ID Q9LF24
description Protein LONGIFOLIA 1 OS=Arabidopsis thaliana GN=LNG1 PE=1 SV=1
trembl
ID A0A067JC11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21857 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21050: 180592-183648 , PASA_asmbl_21051: 180645-183648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_210 0.0 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
2 Hb_001056_040 0.0834039993 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
3 Hb_005496_040 0.0851739467 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
4 Hb_000321_170 0.0869392514 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
5 Hb_000342_040 0.0921507801 - - pollen specific protein sf21, putative [Ricinus communis]
6 Hb_003750_120 0.0926005258 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
7 Hb_000022_080 0.1010160651 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
8 Hb_001025_130 0.1024760424 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
9 Hb_000003_750 0.1031939847 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
10 Hb_001007_020 0.1094287432 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
11 Hb_009252_080 0.1126834461 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
12 Hb_000020_050 0.1152315621 - - PREDICTED: expansin-A6 [Jatropha curcas]
13 Hb_001140_300 0.1173589675 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
14 Hb_002267_060 0.1190202377 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
15 Hb_001709_120 0.1197610745 - - hypothetical protein RCOM_1313640 [Ricinus communis]
16 Hb_025787_020 0.1201270577 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
17 Hb_003935_040 0.1212059879 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
18 Hb_000441_130 0.1218309 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
19 Hb_007218_040 0.1222573436 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
20 Hb_000028_080 0.1235609336 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]

Gene co-expression network

sample Hb_002045_210 Hb_002045_210 Hb_001056_040 Hb_001056_040 Hb_002045_210--Hb_001056_040 Hb_005496_040 Hb_005496_040 Hb_002045_210--Hb_005496_040 Hb_000321_170 Hb_000321_170 Hb_002045_210--Hb_000321_170 Hb_000342_040 Hb_000342_040 Hb_002045_210--Hb_000342_040 Hb_003750_120 Hb_003750_120 Hb_002045_210--Hb_003750_120 Hb_000022_080 Hb_000022_080 Hb_002045_210--Hb_000022_080 Hb_001140_300 Hb_001140_300 Hb_001056_040--Hb_001140_300 Hb_009252_080 Hb_009252_080 Hb_001056_040--Hb_009252_080 Hb_174639_010 Hb_174639_010 Hb_001056_040--Hb_174639_010 Hb_001709_090 Hb_001709_090 Hb_001056_040--Hb_001709_090 Hb_001709_120 Hb_001709_120 Hb_001056_040--Hb_001709_120 Hb_005496_040--Hb_000342_040 Hb_005496_040--Hb_003750_120 Hb_008686_010 Hb_008686_010 Hb_005496_040--Hb_008686_010 Hb_000032_420 Hb_000032_420 Hb_005496_040--Hb_000032_420 Hb_004117_090 Hb_004117_090 Hb_005496_040--Hb_004117_090 Hb_000003_750 Hb_000003_750 Hb_005496_040--Hb_000003_750 Hb_002267_060 Hb_002267_060 Hb_000321_170--Hb_002267_060 Hb_000321_170--Hb_005496_040 Hb_000321_170--Hb_000022_080 Hb_000120_930 Hb_000120_930 Hb_000321_170--Hb_000120_930 Hb_005890_020 Hb_005890_020 Hb_000321_170--Hb_005890_020 Hb_000342_040--Hb_004117_090 Hb_000441_130 Hb_000441_130 Hb_000342_040--Hb_000441_130 Hb_000342_040--Hb_000032_420 Hb_001544_090 Hb_001544_090 Hb_000342_040--Hb_001544_090 Hb_003750_120--Hb_000003_750 Hb_001159_090 Hb_001159_090 Hb_003750_120--Hb_001159_090 Hb_001007_020 Hb_001007_020 Hb_003750_120--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_003750_120--Hb_000418_110 Hb_000022_080--Hb_005496_040 Hb_004195_070 Hb_004195_070 Hb_000022_080--Hb_004195_070 Hb_000022_080--Hb_000441_130 Hb_002818_060 Hb_002818_060 Hb_000022_080--Hb_002818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153966 0.366836 4.08075 5.78502 0.0457382 0.0144654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0349423 0.0137479 0 0.338453 1.49071

CAGE analysis