Hb_002045_260

Information

Type -
Description -
Location Contig2045: 233269-234300
Sequence    

Annotation

kegg
ID rcu:RCOM_0990960
description calmodulin, putative (EC:1.3.1.74)
nr
ID XP_002520954.1
description calmodulin, putative [Ricinus communis]
swissprot
ID Q9LIK5
description Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1
trembl
ID B9S4P7
description Calmodulin, putative OS=Ricinus communis GN=RCOM_0990960 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_260 0.0 - - calmodulin, putative [Ricinus communis]
2 Hb_002157_100 0.114610547 - - -
3 Hb_006262_030 0.119861647 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_042098_010 0.1244852084 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
5 Hb_000656_120 0.1332828834 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
6 Hb_002374_360 0.1361575528 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
7 Hb_007017_110 0.1406316974 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_008080_030 0.14143873 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
9 Hb_000862_060 0.1489410287 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005375_060 0.151724424 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
11 Hb_004703_010 0.1673130164 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_001581_040 0.1686530946 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_003751_050 0.1738324687 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
14 Hb_000483_050 0.186426751 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
15 Hb_003413_020 0.1878730452 - - -
16 Hb_005433_030 0.1880912983 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
17 Hb_006478_140 0.1932583986 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
18 Hb_001971_030 0.1940337971 - - PREDICTED: exonuclease 1 [Jatropha curcas]
19 Hb_003751_100 0.195544671 - - Amino acid permease 2 [Glycine soja]
20 Hb_002973_070 0.1972286143 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]

Gene co-expression network

sample Hb_002045_260 Hb_002045_260 Hb_002157_100 Hb_002157_100 Hb_002045_260--Hb_002157_100 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_042098_010 Hb_042098_010 Hb_002045_260--Hb_042098_010 Hb_000656_120 Hb_000656_120 Hb_002045_260--Hb_000656_120 Hb_002374_360 Hb_002374_360 Hb_002045_260--Hb_002374_360 Hb_007017_110 Hb_007017_110 Hb_002045_260--Hb_007017_110 Hb_003413_020 Hb_003413_020 Hb_002157_100--Hb_003413_020 Hb_000862_060 Hb_000862_060 Hb_002157_100--Hb_000862_060 Hb_008080_030 Hb_008080_030 Hb_002157_100--Hb_008080_030 Hb_002157_100--Hb_007017_110 Hb_002157_100--Hb_002374_360 Hb_004703_010 Hb_004703_010 Hb_006262_030--Hb_004703_010 Hb_006262_030--Hb_042098_010 Hb_006262_030--Hb_008080_030 Hb_001454_290 Hb_001454_290 Hb_006262_030--Hb_001454_290 Hb_001634_030 Hb_001634_030 Hb_006262_030--Hb_001634_030 Hb_001581_040 Hb_001581_040 Hb_042098_010--Hb_001581_040 Hb_042098_010--Hb_008080_030 Hb_005628_050 Hb_005628_050 Hb_042098_010--Hb_005628_050 Hb_000001_010 Hb_000001_010 Hb_042098_010--Hb_000001_010 Hb_002774_180 Hb_002774_180 Hb_042098_010--Hb_002774_180 Hb_000483_050 Hb_000483_050 Hb_000656_120--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000656_120--Hb_150745_010 Hb_011849_030 Hb_011849_030 Hb_000656_120--Hb_011849_030 Hb_001159_220 Hb_001159_220 Hb_000656_120--Hb_001159_220 Hb_001005_170 Hb_001005_170 Hb_000656_120--Hb_001005_170 Hb_002374_360--Hb_000862_060 Hb_003751_050 Hb_003751_050 Hb_002374_360--Hb_003751_050 Hb_005433_030 Hb_005433_030 Hb_002374_360--Hb_005433_030 Hb_002374_360--Hb_008080_030 Hb_007017_110--Hb_000656_120 Hb_007017_110--Hb_004703_010 Hb_007654_010 Hb_007654_010 Hb_007017_110--Hb_007654_010 Hb_007017_110--Hb_001005_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.76535 12.9314 2.22204 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0672632 0.105778 0.0956927 5.26578 0.212389

CAGE analysis