Hb_002045_270

Information

Type -
Description -
Location Contig2045: 235748-236342
Sequence    

Annotation

kegg
ID rcu:RCOM_0990950
description hypothetical protein
nr
ID KDP21393.1
description hypothetical protein JCGZ_21864 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JF40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21864 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_270 0.0 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
2 Hb_000300_380 0.1836734927 - - -
3 Hb_005657_020 0.1934897177 - - -
4 Hb_000375_310 0.1964465128 - - hypothetical protein JCGZ_18643 [Jatropha curcas]
5 Hb_000331_310 0.1987805061 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
6 Hb_000659_030 0.2002898215 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
7 Hb_006452_190 0.2003549191 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
8 Hb_005214_110 0.2054905451 - - -
9 Hb_001158_030 0.2091434561 - - -
10 Hb_015456_020 0.2132347703 - - -
11 Hb_004607_140 0.2161522273 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
12 Hb_017438_020 0.2182486678 - - -
13 Hb_001437_300 0.2216759012 - - -
14 Hb_018133_120 0.2220782221 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
15 Hb_005271_070 0.2238444131 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
16 Hb_000183_070 0.2239092522 - - -
17 Hb_006189_010 0.2241758097 - - -
18 Hb_084934_010 0.2258113924 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
19 Hb_004204_190 0.225887813 - - putative iron-sulfur cluster biosynthesis protein Isd11 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
20 Hb_004374_060 0.226549408 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]

Gene co-expression network

sample Hb_002045_270 Hb_002045_270 Hb_000300_380 Hb_000300_380 Hb_002045_270--Hb_000300_380 Hb_005657_020 Hb_005657_020 Hb_002045_270--Hb_005657_020 Hb_000375_310 Hb_000375_310 Hb_002045_270--Hb_000375_310 Hb_000331_310 Hb_000331_310 Hb_002045_270--Hb_000331_310 Hb_000659_030 Hb_000659_030 Hb_002045_270--Hb_000659_030 Hb_006452_190 Hb_006452_190 Hb_002045_270--Hb_006452_190 Hb_015456_020 Hb_015456_020 Hb_000300_380--Hb_015456_020 Hb_000922_150 Hb_000922_150 Hb_000300_380--Hb_000922_150 Hb_017438_020 Hb_017438_020 Hb_000300_380--Hb_017438_020 Hb_004204_190 Hb_004204_190 Hb_000300_380--Hb_004204_190 Hb_000958_010 Hb_000958_010 Hb_000300_380--Hb_000958_010 Hb_005333_040 Hb_005333_040 Hb_000300_380--Hb_005333_040 Hb_001195_330 Hb_001195_330 Hb_005657_020--Hb_001195_330 Hb_006189_010 Hb_006189_010 Hb_005657_020--Hb_006189_010 Hb_169325_010 Hb_169325_010 Hb_005657_020--Hb_169325_010 Hb_004920_040 Hb_004920_040 Hb_005657_020--Hb_004920_040 Hb_180333_010 Hb_180333_010 Hb_005657_020--Hb_180333_010 Hb_000197_040 Hb_000197_040 Hb_000375_310--Hb_000197_040 Hb_184403_020 Hb_184403_020 Hb_000375_310--Hb_184403_020 Hb_060809_010 Hb_060809_010 Hb_000375_310--Hb_060809_010 Hb_028872_050 Hb_028872_050 Hb_000375_310--Hb_028872_050 Hb_000840_270 Hb_000840_270 Hb_000375_310--Hb_000840_270 Hb_005690_010 Hb_005690_010 Hb_000375_310--Hb_005690_010 Hb_084934_010 Hb_084934_010 Hb_000331_310--Hb_084934_010 Hb_002918_280 Hb_002918_280 Hb_000331_310--Hb_002918_280 Hb_004607_140 Hb_004607_140 Hb_000331_310--Hb_004607_140 Hb_000163_200 Hb_000163_200 Hb_000331_310--Hb_000163_200 Hb_010883_210 Hb_010883_210 Hb_000331_310--Hb_010883_210 Hb_003058_070 Hb_003058_070 Hb_000331_310--Hb_003058_070 Hb_055590_010 Hb_055590_010 Hb_000659_030--Hb_055590_010 Hb_003464_110 Hb_003464_110 Hb_000659_030--Hb_003464_110 Hb_005214_160 Hb_005214_160 Hb_000659_030--Hb_005214_160 Hb_001811_150 Hb_001811_150 Hb_000659_030--Hb_001811_150 Hb_008406_160 Hb_008406_160 Hb_000659_030--Hb_008406_160 Hb_003728_020 Hb_003728_020 Hb_000659_030--Hb_003728_020 Hb_000183_070 Hb_000183_070 Hb_006452_190--Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_006452_190--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_006452_190--Hb_001437_300 Hb_005271_070 Hb_005271_070 Hb_006452_190--Hb_005271_070 Hb_005015_010 Hb_005015_010 Hb_006452_190--Hb_005015_010 Hb_011537_040 Hb_011537_040 Hb_006452_190--Hb_011537_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.422668 0.340993 0 0 0.89929 0.476842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.973974 0.510257 0.147687 0.10493 0.163316

CAGE analysis