Hb_002046_020

Information

Type -
Description -
Location Contig2046: 12710-15109
Sequence    

Annotation

kegg
ID tcc:TCM_038121
description Epsin N-terminal domain-containing protein / clathrin assembly protein-related
nr
ID XP_012081218.1
description PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
swissprot
ID Q8LF20
description Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2
trembl
ID A0A067K5I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17045 PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at2g25430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21064: 12706-15045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_020 0.0 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
2 Hb_000487_380 0.0705529265 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
3 Hb_000236_410 0.0863111667 - - Paramyosin, putative [Ricinus communis]
4 Hb_000941_130 0.0930608046 - - gamma-tubulin complex component, putative [Ricinus communis]
5 Hb_000025_280 0.0962013961 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
6 Hb_003071_020 0.0977741837 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
7 Hb_003078_020 0.0998425372 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
8 Hb_000856_180 0.101890364 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_004586_290 0.1023182017 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
10 Hb_001123_290 0.1024586187 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
11 Hb_005389_160 0.1041805141 - - PREDICTED: casein kinase I [Jatropha curcas]
12 Hb_007850_090 0.1056574224 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
13 Hb_093084_070 0.1063855631 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
14 Hb_003729_030 0.1064969424 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
15 Hb_000260_070 0.1065272068 - - kinase, putative [Ricinus communis]
16 Hb_000373_100 0.1065623974 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
17 Hb_004483_040 0.1073231587 - - hypothetical protein JCGZ_22047 [Jatropha curcas]
18 Hb_010222_070 0.1081809746 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_011242_060 0.1083861311 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
20 Hb_000094_310 0.1095066473 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]

Gene co-expression network

sample Hb_002046_020 Hb_002046_020 Hb_000487_380 Hb_000487_380 Hb_002046_020--Hb_000487_380 Hb_000236_410 Hb_000236_410 Hb_002046_020--Hb_000236_410 Hb_000941_130 Hb_000941_130 Hb_002046_020--Hb_000941_130 Hb_000025_280 Hb_000025_280 Hb_002046_020--Hb_000025_280 Hb_003071_020 Hb_003071_020 Hb_002046_020--Hb_003071_020 Hb_003078_020 Hb_003078_020 Hb_002046_020--Hb_003078_020 Hb_004586_290 Hb_004586_290 Hb_000487_380--Hb_004586_290 Hb_011242_060 Hb_011242_060 Hb_000487_380--Hb_011242_060 Hb_000487_380--Hb_003078_020 Hb_005568_040 Hb_005568_040 Hb_000487_380--Hb_005568_040 Hb_011287_050 Hb_011287_050 Hb_000487_380--Hb_011287_050 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_002890_090 Hb_002890_090 Hb_000941_130--Hb_002890_090 Hb_004109_030 Hb_004109_030 Hb_000941_130--Hb_004109_030 Hb_002111_070 Hb_002111_070 Hb_000941_130--Hb_002111_070 Hb_009615_170 Hb_009615_170 Hb_000941_130--Hb_009615_170 Hb_157966_010 Hb_157966_010 Hb_000941_130--Hb_157966_010 Hb_003729_030 Hb_003729_030 Hb_000941_130--Hb_003729_030 Hb_004483_040 Hb_004483_040 Hb_000025_280--Hb_004483_040 Hb_000069_470 Hb_000069_470 Hb_000025_280--Hb_000069_470 Hb_000017_220 Hb_000017_220 Hb_000025_280--Hb_000017_220 Hb_000317_370 Hb_000317_370 Hb_000025_280--Hb_000317_370 Hb_000025_280--Hb_004586_290 Hb_031042_050 Hb_031042_050 Hb_000025_280--Hb_031042_050 Hb_000856_180 Hb_000856_180 Hb_003071_020--Hb_000856_180 Hb_006922_010 Hb_006922_010 Hb_003071_020--Hb_006922_010 Hb_003071_020--Hb_000236_410 Hb_001019_180 Hb_001019_180 Hb_003071_020--Hb_001019_180 Hb_001840_090 Hb_001840_090 Hb_003071_020--Hb_001840_090 Hb_000094_310 Hb_000094_310 Hb_003078_020--Hb_000094_310 Hb_008937_010 Hb_008937_010 Hb_003078_020--Hb_008937_010 Hb_003078_020--Hb_000941_130 Hb_004410_120 Hb_004410_120 Hb_003078_020--Hb_004410_120 Hb_001489_100 Hb_001489_100 Hb_003078_020--Hb_001489_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4113 19.3788 4.14 9.50642 5.53694 8.28517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.40737 3.63185 8.32834 9.28066 5.41602

CAGE analysis