Hb_002046_030

Information

Type -
Description -
Location Contig2046: 18069-18510
Sequence    

Annotation

kegg
ID brp:103871680
description putative ribonuclease H protein At1g65750
nr
ID XP_010512831.1
description PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
swissprot
ID -
description -
trembl
ID A0A0D3A5H9
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_030 0.0 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
2 Hb_069868_010 0.2512244803 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
3 Hb_000252_140 0.2977191611 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_071079_050 0.3094755807 - - -
5 Hb_045527_010 0.3371938736 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
6 Hb_157340_010 0.3392735863 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
7 Hb_021583_010 0.3416129727 - - -
8 Hb_021943_030 0.3502208889 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_012094_030 0.3537205581 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
10 Hb_175069_010 0.3543658733 - - hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]
11 Hb_063472_010 0.3561591061 - - hypothetical protein [Pseudomonas tolaasii]
12 Hb_173423_010 0.3606817044 - - conserved hypothetical protein [Ricinus communis]
13 Hb_062135_010 0.3608659966 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
14 Hb_000122_240 0.3663656259 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_005222_010 0.3680208809 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
16 Hb_000359_240 0.3694886886 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
17 Hb_001377_390 0.3710862191 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
18 Hb_000025_130 0.3720388607 - - -
19 Hb_102699_010 0.3768656586 desease resistance Gene Name: NB-ARC NBS-LRR type disease resistance protein [Populus trichocarpa]
20 Hb_002365_010 0.3785549788 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_002046_030 Hb_002046_030 Hb_069868_010 Hb_069868_010 Hb_002046_030--Hb_069868_010 Hb_000252_140 Hb_000252_140 Hb_002046_030--Hb_000252_140 Hb_071079_050 Hb_071079_050 Hb_002046_030--Hb_071079_050 Hb_045527_010 Hb_045527_010 Hb_002046_030--Hb_045527_010 Hb_157340_010 Hb_157340_010 Hb_002046_030--Hb_157340_010 Hb_021583_010 Hb_021583_010 Hb_002046_030--Hb_021583_010 Hb_003621_010 Hb_003621_010 Hb_069868_010--Hb_003621_010 Hb_000800_100 Hb_000800_100 Hb_069868_010--Hb_000800_100 Hb_069868_010--Hb_000252_140 Hb_008202_030 Hb_008202_030 Hb_069868_010--Hb_008202_030 Hb_069868_010--Hb_157340_010 Hb_001377_390 Hb_001377_390 Hb_000252_140--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_000252_140--Hb_014556_020 Hb_062135_010 Hb_062135_010 Hb_000252_140--Hb_062135_010 Hb_000359_240 Hb_000359_240 Hb_000252_140--Hb_000359_240 Hb_003554_020 Hb_003554_020 Hb_000252_140--Hb_003554_020 Hb_001907_090 Hb_001907_090 Hb_071079_050--Hb_001907_090 Hb_011639_090 Hb_011639_090 Hb_071079_050--Hb_011639_090 Hb_000684_480 Hb_000684_480 Hb_071079_050--Hb_000684_480 Hb_012094_030 Hb_012094_030 Hb_071079_050--Hb_012094_030 Hb_000926_350 Hb_000926_350 Hb_071079_050--Hb_000926_350 Hb_007188_050 Hb_007188_050 Hb_071079_050--Hb_007188_050 Hb_063472_010 Hb_063472_010 Hb_045527_010--Hb_063472_010 Hb_058148_010 Hb_058148_010 Hb_045527_010--Hb_058148_010 Hb_003185_060 Hb_003185_060 Hb_045527_010--Hb_003185_060 Hb_007194_020 Hb_007194_020 Hb_045527_010--Hb_007194_020 Hb_000580_040 Hb_000580_040 Hb_045527_010--Hb_000580_040 Hb_010810_090 Hb_010810_090 Hb_045527_010--Hb_010810_090 Hb_005595_020 Hb_005595_020 Hb_157340_010--Hb_005595_020 Hb_169488_010 Hb_169488_010 Hb_157340_010--Hb_169488_010 Hb_005063_070 Hb_005063_070 Hb_157340_010--Hb_005063_070 Hb_002365_010 Hb_002365_010 Hb_157340_010--Hb_002365_010 Hb_003702_050 Hb_003702_050 Hb_157340_010--Hb_003702_050 Hb_083569_010 Hb_083569_010 Hb_021583_010--Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_021583_010--Hb_094101_010 Hb_009780_090 Hb_009780_090 Hb_021583_010--Hb_009780_090 Hb_003311_050 Hb_003311_050 Hb_021583_010--Hb_003311_050 Hb_019282_010 Hb_019282_010 Hb_021583_010--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_021583_010--Hb_001427_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0927243 0 0 0 0.527798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.161969 0 0.139295 0

CAGE analysis