Hb_002046_040

Information

Type -
Description -
Location Contig2046: 19299-31350
Sequence    

Annotation

kegg
ID rcu:RCOM_1074790
description WD-repeat protein, putative
nr
ID XP_008337262.1
description PREDICTED: topless-related protein 4 [Malus domestica]
swissprot
ID Q27GK7
description Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2
trembl
ID K4BLH7
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g116750.2 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein topless-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21065: 19379-31206 , PASA_asmbl_21066: 25183-25549 , PASA_asmbl_21068: 20907-21332 , PASA_asmbl_21069: 27585-31153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_040 0.0 - - PREDICTED: topless-related protein 4 [Malus domestica]
2 Hb_000041_220 0.0794600175 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
3 Hb_000307_200 0.0854077764 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
4 Hb_000284_210 0.0886482897 - - conserved hypothetical protein [Ricinus communis]
5 Hb_025012_010 0.090048816 - - PREDICTED: importin-4 [Vitis vinifera]
6 Hb_000017_340 0.0909477831 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
7 Hb_000316_030 0.0962390063 - - zinc finger protein, putative [Ricinus communis]
8 Hb_003434_060 0.0974175852 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
9 Hb_006816_320 0.0997021398 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
10 Hb_001307_140 0.1004561989 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
11 Hb_009620_040 0.1011514725 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
12 Hb_000703_080 0.1036872464 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
13 Hb_002097_090 0.10609473 - - Splicing factor 3A subunit, putative [Ricinus communis]
14 Hb_000076_080 0.1071236745 - - PREDICTED: protein MOS2 [Jatropha curcas]
15 Hb_000390_060 0.1072243147 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
16 Hb_005635_010 0.107394919 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
17 Hb_001040_160 0.1089659143 - - glutaredoxin, grx, putative [Ricinus communis]
18 Hb_000364_150 0.1097765831 - - -
19 Hb_006913_040 0.1098373335 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
20 Hb_001943_010 0.1098969412 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002046_040 Hb_002046_040 Hb_000041_220 Hb_000041_220 Hb_002046_040--Hb_000041_220 Hb_000307_200 Hb_000307_200 Hb_002046_040--Hb_000307_200 Hb_000284_210 Hb_000284_210 Hb_002046_040--Hb_000284_210 Hb_025012_010 Hb_025012_010 Hb_002046_040--Hb_025012_010 Hb_000017_340 Hb_000017_340 Hb_002046_040--Hb_000017_340 Hb_000316_030 Hb_000316_030 Hb_002046_040--Hb_000316_030 Hb_006816_320 Hb_006816_320 Hb_000041_220--Hb_006816_320 Hb_000398_190 Hb_000398_190 Hb_000041_220--Hb_000398_190 Hb_000041_220--Hb_000284_210 Hb_000236_370 Hb_000236_370 Hb_000041_220--Hb_000236_370 Hb_009620_040 Hb_009620_040 Hb_000041_220--Hb_009620_040 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_000703_080 Hb_000703_080 Hb_000284_210--Hb_000703_080 Hb_004934_090 Hb_004934_090 Hb_000284_210--Hb_004934_090 Hb_002097_090 Hb_002097_090 Hb_000284_210--Hb_002097_090 Hb_003994_240 Hb_003994_240 Hb_000284_210--Hb_003994_240 Hb_000284_210--Hb_009620_040 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_000347_130 Hb_000347_130 Hb_025012_010--Hb_000347_130 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_005288_120 Hb_005288_120 Hb_000017_340--Hb_005288_120 Hb_000568_040 Hb_000568_040 Hb_000017_340--Hb_000568_040 Hb_000370_030 Hb_000370_030 Hb_000017_340--Hb_000370_030 Hb_063047_010 Hb_063047_010 Hb_000017_340--Hb_063047_010 Hb_000017_340--Hb_000703_080 Hb_000316_030--Hb_001040_160 Hb_000316_030--Hb_003434_060 Hb_000316_030--Hb_000390_060 Hb_001609_010 Hb_001609_010 Hb_000316_030--Hb_001609_010 Hb_000316_030--Hb_063047_010 Hb_000316_030--Hb_002097_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9502 20.4273 5.73297 10.7143 48.5859 91.2445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6552 28.1913 25.4485 27.1364 12.2498

CAGE analysis