Hb_002046_100

Information

Type transcription factor
Description TF Family: MYB
Location Contig2046: 115337-116719
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12780g
description POPTRDRAFT_578919; hypothetical protein
nr
ID XP_012081207.1
description PREDICTED: transcription factor MYB82 [Jatropha curcas]
swissprot
ID Q9LTF7
description Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1
trembl
ID A0A067K2D3
description MYB family protein OS=Jatropha curcas GN=JCGZ_17039 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb82-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_100 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
2 Hb_000204_030 0.1062052748 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_000245_140 0.1359133428 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
4 Hb_000563_610 0.1363491587 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
5 Hb_004445_090 0.1421684089 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001168_010 0.1516607944 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
7 Hb_000648_120 0.1525025749 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
8 Hb_001104_200 0.1597128264 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
9 Hb_000739_130 0.1598593325 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001268_330 0.1627999646 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_003428_100 0.1655363927 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_012553_020 0.1655956824 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
13 Hb_000556_140 0.1692053827 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
14 Hb_131864_020 0.1697407029 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
15 Hb_003205_030 0.1724996126 - - Pectinesterase inhibitor, putative [Ricinus communis]
16 Hb_029510_110 0.1735479711 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
17 Hb_002232_370 0.1755878291 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_004855_050 0.1758822806 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
19 Hb_148914_010 0.1758905146 - - glutathione s-transferase, putative [Ricinus communis]
20 Hb_000230_100 0.1774582723 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002046_100 Hb_002046_100 Hb_000204_030 Hb_000204_030 Hb_002046_100--Hb_000204_030 Hb_000245_140 Hb_000245_140 Hb_002046_100--Hb_000245_140 Hb_000563_610 Hb_000563_610 Hb_002046_100--Hb_000563_610 Hb_004445_090 Hb_004445_090 Hb_002046_100--Hb_004445_090 Hb_001168_010 Hb_001168_010 Hb_002046_100--Hb_001168_010 Hb_000648_120 Hb_000648_120 Hb_002046_100--Hb_000648_120 Hb_001104_200 Hb_001104_200 Hb_000204_030--Hb_001104_200 Hb_029510_110 Hb_029510_110 Hb_000204_030--Hb_029510_110 Hb_000204_030--Hb_000563_610 Hb_000204_030--Hb_004445_090 Hb_003428_100 Hb_003428_100 Hb_000204_030--Hb_003428_100 Hb_002232_370 Hb_002232_370 Hb_000245_140--Hb_002232_370 Hb_002965_020 Hb_002965_020 Hb_000245_140--Hb_002965_020 Hb_148914_010 Hb_148914_010 Hb_000245_140--Hb_148914_010 Hb_000976_020 Hb_000976_020 Hb_000245_140--Hb_000976_020 Hb_000245_140--Hb_000648_120 Hb_000245_140--Hb_000563_610 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060 Hb_004445_090--Hb_000245_140 Hb_004445_090--Hb_000563_610 Hb_004445_090--Hb_002232_370 Hb_004445_090--Hb_000739_130 Hb_000438_190 Hb_000438_190 Hb_004445_090--Hb_000438_190 Hb_000327_300 Hb_000327_300 Hb_001168_010--Hb_000327_300 Hb_001168_010--Hb_000245_140 Hb_000631_130 Hb_000631_130 Hb_001168_010--Hb_000631_130 Hb_004586_080 Hb_004586_080 Hb_001168_010--Hb_004586_080 Hb_008080_040 Hb_008080_040 Hb_001168_010--Hb_008080_040 Hb_000038_090 Hb_000038_090 Hb_001168_010--Hb_000038_090 Hb_000301_030 Hb_000301_030 Hb_000648_120--Hb_000301_030 Hb_000281_200 Hb_000281_200 Hb_000648_120--Hb_000281_200 Hb_020332_040 Hb_020332_040 Hb_000648_120--Hb_020332_040 Hb_000135_050 Hb_000135_050 Hb_000648_120--Hb_000135_050 Hb_001544_040 Hb_001544_040 Hb_000648_120--Hb_001544_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201971 1.00933 0.769735 0.742398 0.171137 0.101545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0346029 0.320695 9.88237 0.356658

CAGE analysis