Hb_002046_110

Information

Type -
Description -
Location Contig2046: 117128-135417
Sequence    

Annotation

kegg
ID rcu:RCOM_1074140
description hypothetical protein
nr
ID XP_012081205.1
description PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
swissprot
ID Q8TC07
description TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2
trembl
ID A0A067K234
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21076: 117140-135280 , PASA_asmbl_21077: 130318-130445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_110 0.0 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
2 Hb_009083_070 0.0659400237 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
3 Hb_002325_040 0.0665278339 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
4 Hb_005306_160 0.0668702375 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
5 Hb_000928_220 0.0671846272 - - PREDICTED: protein SCAI [Jatropha curcas]
6 Hb_001135_120 0.0690483227 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
7 Hb_000076_160 0.0760201609 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
8 Hb_000070_080 0.0782271007 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
9 Hb_184798_080 0.0787764839 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
10 Hb_005918_010 0.079774769 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
11 Hb_001153_190 0.0816145732 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
12 Hb_001147_110 0.0838629869 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
13 Hb_002276_240 0.0838893721 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
14 Hb_002078_220 0.0843924805 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
15 Hb_002078_110 0.0849449365 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
16 Hb_000120_170 0.0849540305 - - selenoprotein [Populus trichocarpa]
17 Hb_002217_170 0.0861645617 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
18 Hb_000803_070 0.0866850703 - - PREDICTED: protein TRAUCO [Jatropha curcas]
19 Hb_002876_130 0.0868560178 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
20 Hb_008147_040 0.0869808475 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002046_110 Hb_002046_110 Hb_009083_070 Hb_009083_070 Hb_002046_110--Hb_009083_070 Hb_002325_040 Hb_002325_040 Hb_002046_110--Hb_002325_040 Hb_005306_160 Hb_005306_160 Hb_002046_110--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_002046_110--Hb_000928_220 Hb_001135_120 Hb_001135_120 Hb_002046_110--Hb_001135_120 Hb_000076_160 Hb_000076_160 Hb_002046_110--Hb_000076_160 Hb_002276_240 Hb_002276_240 Hb_009083_070--Hb_002276_240 Hb_184798_080 Hb_184798_080 Hb_009083_070--Hb_184798_080 Hb_004129_070 Hb_004129_070 Hb_009083_070--Hb_004129_070 Hb_009083_070--Hb_001135_120 Hb_005918_010 Hb_005918_010 Hb_009083_070--Hb_005918_010 Hb_002477_250 Hb_002477_250 Hb_002325_040--Hb_002477_250 Hb_002325_040--Hb_001135_120 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_002325_040--Hb_184798_080 Hb_001147_110 Hb_001147_110 Hb_002325_040--Hb_001147_110 Hb_005306_160--Hb_000076_160 Hb_005306_160--Hb_000928_220 Hb_000576_020 Hb_000576_020 Hb_005306_160--Hb_000576_020 Hb_000070_080 Hb_000070_080 Hb_005306_160--Hb_000070_080 Hb_000309_040 Hb_000309_040 Hb_005306_160--Hb_000309_040 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_000928_220--Hb_000076_160 Hb_002078_110 Hb_002078_110 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_001135_120--Hb_004129_070 Hb_003096_060 Hb_003096_060 Hb_001135_120--Hb_003096_060 Hb_001033_050 Hb_001033_050 Hb_001135_120--Hb_001033_050 Hb_001135_120--Hb_184798_080 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.1292 63.332 55.348 45.9457 48.2525 38.9017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0293 26.271 37.0109 43.7366 22.3176

CAGE analysis