Hb_002046_170

Information

Type -
Description -
Location Contig2046: 194049-197438
Sequence    

Annotation

kegg
ID egr:104456279
description petal death protein
nr
ID XP_010069343.1
description PREDICTED: petal death protein [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059AW50
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00431 PE=4 SV=1
Gene Ontology
ID GO:0009507
description phosphoenolpyruvate carboxylase family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21082: 192649-193079 , PASA_asmbl_21083: 193116-193520 , PASA_asmbl_21086: 195921-197646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_170 0.0 - - PREDICTED: petal death protein [Eucalyptus grandis]
2 Hb_145084_010 0.235871832 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
3 Hb_000230_150 0.2448331828 - - sugar transporter, putative [Ricinus communis]
4 Hb_000635_010 0.2529259179 - - -
5 Hb_000954_020 0.2650727907 - - -
6 Hb_014324_030 0.2700082141 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
7 Hb_000184_230 0.2709312114 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
8 Hb_000896_040 0.272515815 - - BnaC02g13240D [Brassica napus]
9 Hb_005391_030 0.280682075 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
10 Hb_004754_070 0.2814373791 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
11 Hb_180074_010 0.282116979 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000015_030 0.2829604809 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
13 Hb_000230_240 0.2846541626 - - tRNA/rRNA methyltransferase family protein [Populus trichocarpa]
14 Hb_001623_320 0.2849972733 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 isoform X1 [Populus euphratica]
15 Hb_032208_060 0.2857349652 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
16 Hb_088202_010 0.2857945858 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
17 Hb_031718_010 0.2858706434 - - -
18 Hb_002217_230 0.286277045 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
19 Hb_001517_020 0.2874749618 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
20 Hb_001269_490 0.2876125363 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002046_170 Hb_002046_170 Hb_145084_010 Hb_145084_010 Hb_002046_170--Hb_145084_010 Hb_000230_150 Hb_000230_150 Hb_002046_170--Hb_000230_150 Hb_000635_010 Hb_000635_010 Hb_002046_170--Hb_000635_010 Hb_000954_020 Hb_000954_020 Hb_002046_170--Hb_000954_020 Hb_014324_030 Hb_014324_030 Hb_002046_170--Hb_014324_030 Hb_000184_230 Hb_000184_230 Hb_002046_170--Hb_000184_230 Hb_002609_060 Hb_002609_060 Hb_145084_010--Hb_002609_060 Hb_000363_200 Hb_000363_200 Hb_145084_010--Hb_000363_200 Hb_000907_170 Hb_000907_170 Hb_145084_010--Hb_000907_170 Hb_001863_090 Hb_001863_090 Hb_145084_010--Hb_001863_090 Hb_003097_210 Hb_003097_210 Hb_145084_010--Hb_003097_210 Hb_001016_090 Hb_001016_090 Hb_145084_010--Hb_001016_090 Hb_005391_030 Hb_005391_030 Hb_000230_150--Hb_005391_030 Hb_000356_090 Hb_000356_090 Hb_000230_150--Hb_000356_090 Hb_000450_130 Hb_000450_130 Hb_000230_150--Hb_000450_130 Hb_002838_030 Hb_002838_030 Hb_000230_150--Hb_002838_030 Hb_001269_490 Hb_001269_490 Hb_000230_150--Hb_001269_490 Hb_000915_120 Hb_000915_120 Hb_000230_150--Hb_000915_120 Hb_160837_010 Hb_160837_010 Hb_000635_010--Hb_160837_010 Hb_000635_010--Hb_145084_010 Hb_000270_620 Hb_000270_620 Hb_000635_010--Hb_000270_620 Hb_002151_050 Hb_002151_050 Hb_000635_010--Hb_002151_050 Hb_012239_100 Hb_012239_100 Hb_000635_010--Hb_012239_100 Hb_000098_220 Hb_000098_220 Hb_000635_010--Hb_000098_220 Hb_001951_270 Hb_001951_270 Hb_000954_020--Hb_001951_270 Hb_009659_010 Hb_009659_010 Hb_000954_020--Hb_009659_010 Hb_000191_020 Hb_000191_020 Hb_000954_020--Hb_000191_020 Hb_000805_130 Hb_000805_130 Hb_000954_020--Hb_000805_130 Hb_003607_170 Hb_003607_170 Hb_000954_020--Hb_003607_170 Hb_000617_090 Hb_000617_090 Hb_000954_020--Hb_000617_090 Hb_002701_050 Hb_002701_050 Hb_014324_030--Hb_002701_050 Hb_001155_030 Hb_001155_030 Hb_014324_030--Hb_001155_030 Hb_001048_020 Hb_001048_020 Hb_014324_030--Hb_001048_020 Hb_000792_130 Hb_000792_130 Hb_014324_030--Hb_000792_130 Hb_007441_270 Hb_007441_270 Hb_014324_030--Hb_007441_270 Hb_000917_110 Hb_000917_110 Hb_014324_030--Hb_000917_110 Hb_007218_070 Hb_007218_070 Hb_000184_230--Hb_007218_070 Hb_000614_170 Hb_000614_170 Hb_000184_230--Hb_000614_170 Hb_007432_020 Hb_007432_020 Hb_000184_230--Hb_007432_020 Hb_000563_190 Hb_000563_190 Hb_000184_230--Hb_000563_190 Hb_005873_010 Hb_005873_010 Hb_000184_230--Hb_005873_010 Hb_002217_230 Hb_002217_230 Hb_000184_230--Hb_002217_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0767696 0 0.0717738 0.0807573 0 0.112709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0702841 0.331571 0.199354 0.223921 0

CAGE analysis