Hb_002046_180

Information

Type -
Description -
Location Contig2046: 204291-207523
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12730g
description POPTRDRAFT_809391; hypothetical protein
nr
ID XP_012081201.1
description PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17034 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin system component cue isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21087: 204373-207506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_180 0.0 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
2 Hb_012019_010 0.0432785775 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
3 Hb_002110_150 0.0453991917 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
4 Hb_005779_060 0.0455692288 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_000876_070 0.0508805946 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
6 Hb_008725_260 0.0533508229 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
7 Hb_005463_100 0.0539806603 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
8 Hb_000684_470 0.0568341295 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
9 Hb_000003_250 0.0611895816 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
10 Hb_000373_070 0.0635490628 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
11 Hb_001245_100 0.0635913198 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
12 Hb_000866_220 0.0636809314 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
13 Hb_009767_110 0.0643009935 - - -
14 Hb_000250_060 0.065594252 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
15 Hb_000331_550 0.0657851134 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
16 Hb_001633_210 0.0687022855 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
17 Hb_058999_020 0.0690489138 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
18 Hb_001157_040 0.0693418487 - - casein kinase, putative [Ricinus communis]
19 Hb_002739_100 0.0698091748 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
20 Hb_000614_160 0.0700656343 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002046_180 Hb_002046_180 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_002046_180--Hb_002110_150 Hb_005779_060 Hb_005779_060 Hb_002046_180--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002046_180--Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_012019_010--Hb_005779_060 Hb_012019_010--Hb_000876_070 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160 Hb_002110_150--Hb_008725_260 Hb_002110_150--Hb_005779_060 Hb_002110_150--Hb_005463_100 Hb_000016_250 Hb_000016_250 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110 Hb_005779_060--Hb_000876_070 Hb_005779_060--Hb_000016_250 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_000876_070--Hb_002739_100 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_009178_030 Hb_009178_030 Hb_008725_260--Hb_009178_030 Hb_008725_260--Hb_000876_070 Hb_007532_030 Hb_007532_030 Hb_008725_260--Hb_007532_030 Hb_000684_470 Hb_000684_470 Hb_005463_100--Hb_000684_470 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_005463_100--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.1882 67.3281 51.9238 57.3495 57.2268 72.9474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.1233 113.012 114.207 55.5129 63.5526

CAGE analysis