Hb_002046_190

Information

Type -
Description -
Location Contig2046: 213041-214775
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06480g
description POPTRDRAFT_560576; calcium-binding family protein
nr
ID XP_002308063.2
description calcium-binding family protein [Populus trichocarpa]
swissprot
ID Q9LX27
description Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1
trembl
ID B9HA89
description Calcium-binding family protein OS=Populus trichocarpa GN=POPTR_0006s06480g PE=4 SV=2
Gene Ontology
ID GO:0005509
description calmodulin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21088: 213159-214923 , PASA_asmbl_21089: 213647-214923
cDNA
(Sanger)
(ID:Location)		 015_M20.ab1: 214207-214748 , 022_F19.ab1: 213199-214748 , 032_L17.ab1: 214312-214747 , 033_A19.ab1: 214273-214848 , 037_J03.ab1: 214139-214923

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_190 0.0 - - calcium-binding family protein [Populus trichocarpa]
2 Hb_001100_060 0.0858204345 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
3 Hb_000009_080 0.0947645519 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 15 [Jatropha curcas]
4 Hb_002762_120 0.115105426 - - PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]
5 Hb_055488_010 0.1171007694 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
6 Hb_000699_140 0.1190091895 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
7 Hb_000012_430 0.1192752816 - - calcineurin B, putative [Ricinus communis]
8 Hb_003376_040 0.1199681702 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
9 Hb_002774_060 0.1204360759 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
10 Hb_004724_420 0.1205885254 - - fucose synthetase, putative [Ricinus communis]
11 Hb_000512_060 0.1224997332 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
12 Hb_003929_160 0.1225921185 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
13 Hb_001269_680 0.1249498801 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
14 Hb_005686_060 0.1249874909 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
15 Hb_000045_090 0.1262747552 - - PREDICTED: syntaxin-31 [Jatropha curcas]
16 Hb_003001_120 0.1278912426 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
17 Hb_000230_200 0.1283500087 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
18 Hb_007477_080 0.1309751757 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032215_050 0.1310020882 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
20 Hb_003206_070 0.132196892 - - organic anion transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002046_190 Hb_002046_190 Hb_001100_060 Hb_001100_060 Hb_002046_190--Hb_001100_060 Hb_000009_080 Hb_000009_080 Hb_002046_190--Hb_000009_080 Hb_002762_120 Hb_002762_120 Hb_002046_190--Hb_002762_120 Hb_055488_010 Hb_055488_010 Hb_002046_190--Hb_055488_010 Hb_000699_140 Hb_000699_140 Hb_002046_190--Hb_000699_140 Hb_000012_430 Hb_000012_430 Hb_002046_190--Hb_000012_430 Hb_000671_050 Hb_000671_050 Hb_001100_060--Hb_000671_050 Hb_011316_040 Hb_011316_040 Hb_001100_060--Hb_011316_040 Hb_005663_060 Hb_005663_060 Hb_001100_060--Hb_005663_060 Hb_000173_290 Hb_000173_290 Hb_001100_060--Hb_000173_290 Hb_001959_070 Hb_001959_070 Hb_001100_060--Hb_001959_070 Hb_000512_060 Hb_000512_060 Hb_000009_080--Hb_000512_060 Hb_148025_010 Hb_148025_010 Hb_000009_080--Hb_148025_010 Hb_005686_060 Hb_005686_060 Hb_000009_080--Hb_005686_060 Hb_109092_010 Hb_109092_010 Hb_000009_080--Hb_109092_010 Hb_002835_080 Hb_002835_080 Hb_000009_080--Hb_002835_080 Hb_000959_260 Hb_000959_260 Hb_002762_120--Hb_000959_260 Hb_010180_020 Hb_010180_020 Hb_002762_120--Hb_010180_020 Hb_010504_020 Hb_010504_020 Hb_002762_120--Hb_010504_020 Hb_003001_120 Hb_003001_120 Hb_002762_120--Hb_003001_120 Hb_007380_070 Hb_007380_070 Hb_002762_120--Hb_007380_070 Hb_003929_160 Hb_003929_160 Hb_002762_120--Hb_003929_160 Hb_001195_600 Hb_001195_600 Hb_055488_010--Hb_001195_600 Hb_055488_010--Hb_000512_060 Hb_055488_010--Hb_001100_060 Hb_004678_040 Hb_004678_040 Hb_055488_010--Hb_004678_040 Hb_055488_010--Hb_000671_050 Hb_000416_040 Hb_000416_040 Hb_055488_010--Hb_000416_040 Hb_001100_050 Hb_001100_050 Hb_000699_140--Hb_001100_050 Hb_000620_010 Hb_000620_010 Hb_000699_140--Hb_000620_010 Hb_007477_080 Hb_007477_080 Hb_000699_140--Hb_007477_080 Hb_001862_190 Hb_001862_190 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000699_140--Hb_000512_060 Hb_000230_200 Hb_000230_200 Hb_000012_430--Hb_000230_200 Hb_002681_050 Hb_002681_050 Hb_000012_430--Hb_002681_050 Hb_000768_170 Hb_000768_170 Hb_000012_430--Hb_000768_170 Hb_002529_060 Hb_002529_060 Hb_000012_430--Hb_002529_060 Hb_007904_200 Hb_007904_200 Hb_000012_430--Hb_007904_200 Hb_000085_180 Hb_000085_180 Hb_000012_430--Hb_000085_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.1912 19.682 22.5758 46.0882 23.0926 72.455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.8086 49.188 70.1171 10.1296 27.3776

CAGE analysis