Hb_002047_020

Information

Type -
Description -
Location Contig2047: 55392-65485
Sequence    

Annotation

kegg
ID rcu:RCOM_0952830
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative (EC:2.1.1.14)
nr
ID XP_002515852.1
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
swissprot
ID Q42662
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Plectranthus scutellarioides GN=MET PE=1 SV=2
trembl
ID B9RQ33
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative OS=Ricinus communis GN=RCOM_0952830 PE=3 SV=1
Gene Ontology
ID GO:0005829
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002047_020 0.0 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
2 Hb_001496_080 0.2342618 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_001188_120 0.2480318222 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
4 Hb_001341_020 0.2535839684 - - Uncharacterised protein [Bordetella pertussis]
5 Hb_003186_040 0.262656539 - - PREDICTED: protein DENND6A [Jatropha curcas]
6 Hb_133047_020 0.2778229094 - - lysophosphatidic acid acyltransferase, putative [Ricinus communis]
7 Hb_001085_210 0.2803658334 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
8 Hb_022958_010 0.2900556604 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
9 Hb_128531_010 0.2917805165 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_185058_020 0.2931267202 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
11 Hb_057638_010 0.2935450985 - - PREDICTED: uncharacterized protein LOC105637008 [Jatropha curcas]
12 Hb_002226_050 0.2939923714 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
13 Hb_131872_010 0.294416834 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_087161_010 0.2955531634 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_007054_050 0.2962216494 - - -
16 Hb_033908_010 0.2973701085 - - -
17 Hb_181026_010 0.2978671158 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
18 Hb_015978_050 0.3041201177 - - -
19 Hb_095835_010 0.3045174382 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
20 Hb_005396_060 0.3047985592 - - -

Gene co-expression network

sample Hb_002047_020 Hb_002047_020 Hb_001496_080 Hb_001496_080 Hb_002047_020--Hb_001496_080 Hb_001188_120 Hb_001188_120 Hb_002047_020--Hb_001188_120 Hb_001341_020 Hb_001341_020 Hb_002047_020--Hb_001341_020 Hb_003186_040 Hb_003186_040 Hb_002047_020--Hb_003186_040 Hb_133047_020 Hb_133047_020 Hb_002047_020--Hb_133047_020 Hb_001085_210 Hb_001085_210 Hb_002047_020--Hb_001085_210 Hb_015978_050 Hb_015978_050 Hb_001496_080--Hb_015978_050 Hb_154141_010 Hb_154141_010 Hb_001496_080--Hb_154141_010 Hb_085083_020 Hb_085083_020 Hb_001496_080--Hb_085083_020 Hb_022958_010 Hb_022958_010 Hb_001496_080--Hb_022958_010 Hb_000236_450 Hb_000236_450 Hb_001496_080--Hb_000236_450 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_001188_120--Hb_085083_020 Hb_076795_010 Hb_076795_010 Hb_001188_120--Hb_076795_010 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_002226_050 Hb_002226_050 Hb_001341_020--Hb_002226_050 Hb_006452_240 Hb_006452_240 Hb_001341_020--Hb_006452_240 Hb_000022_140 Hb_000022_140 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010 Hb_003186_040--Hb_000022_140 Hb_003186_040--Hb_001085_210 Hb_008803_040 Hb_008803_040 Hb_003186_040--Hb_008803_040 Hb_000058_080 Hb_000058_080 Hb_003186_040--Hb_000058_080 Hb_002811_190 Hb_002811_190 Hb_003186_040--Hb_002811_190 Hb_003186_040--Hb_002226_050 Hb_088410_010 Hb_088410_010 Hb_133047_020--Hb_088410_010 Hb_002473_140 Hb_002473_140 Hb_133047_020--Hb_002473_140 Hb_006113_010 Hb_006113_010 Hb_133047_020--Hb_006113_010 Hb_001671_090 Hb_001671_090 Hb_133047_020--Hb_001671_090 Hb_159938_010 Hb_159938_010 Hb_133047_020--Hb_159938_010 Hb_001085_210--Hb_185058_020 Hb_013691_050 Hb_013691_050 Hb_001085_210--Hb_013691_050 Hb_001096_020 Hb_001096_020 Hb_001085_210--Hb_001096_020 Hb_069147_010 Hb_069147_010 Hb_001085_210--Hb_069147_010 Hb_142570_010 Hb_142570_010 Hb_001085_210--Hb_142570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.04269 0 0.0234082 0 0.00729571 0.0141446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0176915 0.0139212 0.0796149 0.171374 0.266312

CAGE analysis