Hb_002048_090

Information

Type -
Description -
Location Contig2048: 68921-73579
Sequence    

Annotation

kegg
ID rcu:RCOM_1416580
description hypothetical protein
nr
ID XP_012085283.1
description PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15145 PE=4 SV=1
Gene Ontology
ID GO:0016740
description phosphoserine aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21095: 71762-72063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002048_090 0.0 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
2 Hb_001396_290 0.0693467358 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
3 Hb_073171_080 0.0796455125 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
4 Hb_009913_050 0.0797689719 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
5 Hb_000244_240 0.0818832938 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004225_130 0.081968232 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
7 Hb_002883_010 0.0851517243 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
8 Hb_024990_010 0.0862180818 - - PREDICTED: la protein 1 [Jatropha curcas]
9 Hb_001301_210 0.0880697072 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
10 Hb_001437_100 0.0883072058 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
11 Hb_002043_170 0.0891521087 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
12 Hb_000318_140 0.0900393167 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
13 Hb_000230_370 0.0903429209 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
14 Hb_002235_320 0.09050797 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
15 Hb_000640_320 0.0929549256 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
16 Hb_002942_080 0.093028892 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
17 Hb_005214_060 0.0936103999 - - catalytic, putative [Ricinus communis]
18 Hb_046615_020 0.09399746 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
19 Hb_002411_180 0.0956355437 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
20 Hb_000120_510 0.0957603732 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002048_090 Hb_002048_090 Hb_001396_290 Hb_001396_290 Hb_002048_090--Hb_001396_290 Hb_073171_080 Hb_073171_080 Hb_002048_090--Hb_073171_080 Hb_009913_050 Hb_009913_050 Hb_002048_090--Hb_009913_050 Hb_000244_240 Hb_000244_240 Hb_002048_090--Hb_000244_240 Hb_004225_130 Hb_004225_130 Hb_002048_090--Hb_004225_130 Hb_002883_010 Hb_002883_010 Hb_002048_090--Hb_002883_010 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_001396_290--Hb_004225_130 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_001396_290--Hb_073171_080 Hb_000684_420 Hb_000684_420 Hb_073171_080--Hb_000684_420 Hb_004724_360 Hb_004724_360 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_005214_060 Hb_005214_060 Hb_009913_050--Hb_005214_060 Hb_002942_080 Hb_002942_080 Hb_009913_050--Hb_002942_080 Hb_000318_140 Hb_000318_140 Hb_009913_050--Hb_000318_140 Hb_009913_050--Hb_001396_290 Hb_025557_020 Hb_025557_020 Hb_009913_050--Hb_025557_020 Hb_002159_040 Hb_002159_040 Hb_000244_240--Hb_002159_040 Hb_001301_210 Hb_001301_210 Hb_000244_240--Hb_001301_210 Hb_007348_030 Hb_007348_030 Hb_000244_240--Hb_007348_030 Hb_046615_020 Hb_046615_020 Hb_000244_240--Hb_046615_020 Hb_000244_240--Hb_000120_510 Hb_000230_370 Hb_000230_370 Hb_000244_240--Hb_000230_370 Hb_002235_320 Hb_002235_320 Hb_004225_130--Hb_002235_320 Hb_006002_030 Hb_006002_030 Hb_004225_130--Hb_006002_030 Hb_000239_070 Hb_000239_070 Hb_004225_130--Hb_000239_070 Hb_002411_120 Hb_002411_120 Hb_004225_130--Hb_002411_120 Hb_001437_100 Hb_001437_100 Hb_002883_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_002883_010--Hb_000239_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.4763 32.6131 24.6609 11.2063 65.2252 93.8441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.6229 16.7153 15.5964 18.0967 18.7517

CAGE analysis