Hb_002053_060

Information

Type -
Description -
Location Contig2053: 66676-68584
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08210g
description POPTRDRAFT_548563; zinc finger family protein
nr
ID XP_012087070.1
description PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
swissprot
ID Q9SZ69
description Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1
trembl
ID A0A067JZZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20731 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger a20 and an1 domain-containing stress-associated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21164: 66540-68493
cDNA
(Sanger)
(ID:Location)		 011_L23.ab1: 67009-68493 , 013_P15.ab1: 67105-68492

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_060 0.0 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
2 Hb_016604_020 0.0969872267 - - -
3 Hb_002759_230 0.1055440405 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
4 Hb_003106_050 0.1089871519 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
5 Hb_000099_060 0.1114041408 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
6 Hb_002909_060 0.1144037429 - - 3-5 exonuclease, putative [Ricinus communis]
7 Hb_002182_060 0.1157373879 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
8 Hb_021409_160 0.1183362736 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
9 Hb_002298_050 0.1209797175 - - serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_007382_150 0.1217011248 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
11 Hb_009787_040 0.1218487253 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
12 Hb_000165_010 0.1235231472 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
13 Hb_029866_060 0.1263853882 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
14 Hb_003504_020 0.1271084925 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
15 Hb_019654_090 0.1279768152 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
16 Hb_002454_030 0.1286292472 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
17 Hb_002798_050 0.1302604201 - - l-allo-threonine aldolase, putative [Ricinus communis]
18 Hb_000563_240 0.1311034462 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
19 Hb_004951_040 0.1328541578 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
20 Hb_003579_030 0.1329302673 - - phosphatase 2C family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002053_060 Hb_002053_060 Hb_016604_020 Hb_016604_020 Hb_002053_060--Hb_016604_020 Hb_002759_230 Hb_002759_230 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_000099_060 Hb_000099_060 Hb_002053_060--Hb_000099_060 Hb_002909_060 Hb_002909_060 Hb_002053_060--Hb_002909_060 Hb_002182_060 Hb_002182_060 Hb_002053_060--Hb_002182_060 Hb_002609_280 Hb_002609_280 Hb_016604_020--Hb_002609_280 Hb_003216_100 Hb_003216_100 Hb_016604_020--Hb_003216_100 Hb_016604_020--Hb_002182_060 Hb_003992_080 Hb_003992_080 Hb_016604_020--Hb_003992_080 Hb_000264_090 Hb_000264_090 Hb_016604_020--Hb_000264_090 Hb_000188_130 Hb_000188_130 Hb_002759_230--Hb_000188_130 Hb_000212_260 Hb_000212_260 Hb_002759_230--Hb_000212_260 Hb_002759_230--Hb_002909_060 Hb_002759_230--Hb_000099_060 Hb_001912_010 Hb_001912_010 Hb_002759_230--Hb_001912_010 Hb_003581_090 Hb_003581_090 Hb_002759_230--Hb_003581_090 Hb_003106_050--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_003106_050--Hb_008173_090 Hb_014720_080 Hb_014720_080 Hb_003106_050--Hb_014720_080 Hb_029866_060 Hb_029866_060 Hb_003106_050--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003106_050--Hb_000111_330 Hb_000503_050 Hb_000503_050 Hb_003106_050--Hb_000503_050 Hb_000134_330 Hb_000134_330 Hb_000099_060--Hb_000134_330 Hb_000099_060--Hb_002182_060 Hb_000099_060--Hb_008173_090 Hb_155764_020 Hb_155764_020 Hb_000099_060--Hb_155764_020 Hb_000970_010 Hb_000970_010 Hb_000099_060--Hb_000970_010 Hb_001269_270 Hb_001269_270 Hb_000099_060--Hb_001269_270 Hb_002027_400 Hb_002027_400 Hb_002909_060--Hb_002027_400 Hb_002540_030 Hb_002540_030 Hb_002909_060--Hb_002540_030 Hb_002909_060--Hb_001912_010 Hb_010172_070 Hb_010172_070 Hb_002909_060--Hb_010172_070 Hb_002182_060--Hb_008173_090 Hb_002182_060--Hb_000970_010 Hb_000200_100 Hb_000200_100 Hb_002182_060--Hb_000200_100 Hb_002301_140 Hb_002301_140 Hb_002182_060--Hb_002301_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
237.157 106.918 35.8121 72.225 108.679 79.8747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
272.919 472.429 353.005 51.9017 31.8186

CAGE analysis