Hb_002053_090

Information

Type -
Description -
Location Contig2053: 101132-101845
Sequence    

Annotation

kegg
ID rcu:RCOM_0237740
description hypothetical protein
nr
ID XP_002533787.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LMK2
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
trembl
ID B9T6B5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0237740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_050898_010 0.1249912539 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_000002_230 0.1279797917 - - RING/U-box superfamily protein [Theobroma cacao]
4 Hb_005695_020 0.1344628652 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
5 Hb_000316_080 0.1396119196 - - ENTH/VHS family protein [Theobroma cacao]
6 Hb_140848_010 0.1399603462 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
7 Hb_000720_060 0.1429297031 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
8 Hb_001976_120 0.1462418173 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
9 Hb_000111_190 0.1472329723 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
10 Hb_183209_020 0.1483562617 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
11 Hb_002735_010 0.1484775839 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
12 Hb_010381_110 0.1517767497 - - PRA1 family protein [Theobroma cacao]
13 Hb_001277_420 0.1518900629 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
14 Hb_001610_050 0.1524030822 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
15 Hb_064047_010 0.1544042901 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005892_010 0.1555277179 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
17 Hb_001016_040 0.156608533 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
18 Hb_000127_070 0.1567014769 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
19 Hb_002110_210 0.1571522146 - - purine transporter, putative [Ricinus communis]
20 Hb_183820_010 0.1580844429 - - Disease resistance protein RFL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002053_090 Hb_002053_090 Hb_050898_010 Hb_050898_010 Hb_002053_090--Hb_050898_010 Hb_000002_230 Hb_000002_230 Hb_002053_090--Hb_000002_230 Hb_005695_020 Hb_005695_020 Hb_002053_090--Hb_005695_020 Hb_000316_080 Hb_000316_080 Hb_002053_090--Hb_000316_080 Hb_140848_010 Hb_140848_010 Hb_002053_090--Hb_140848_010 Hb_000720_060 Hb_000720_060 Hb_002053_090--Hb_000720_060 Hb_005892_010 Hb_005892_010 Hb_050898_010--Hb_005892_010 Hb_000922_290 Hb_000922_290 Hb_050898_010--Hb_000922_290 Hb_183209_020 Hb_183209_020 Hb_050898_010--Hb_183209_020 Hb_000137_030 Hb_000137_030 Hb_050898_010--Hb_000137_030 Hb_103541_010 Hb_103541_010 Hb_050898_010--Hb_103541_010 Hb_000816_050 Hb_000816_050 Hb_050898_010--Hb_000816_050 Hb_000203_150 Hb_000203_150 Hb_000002_230--Hb_000203_150 Hb_002894_040 Hb_002894_040 Hb_000002_230--Hb_002894_040 Hb_179118_010 Hb_179118_010 Hb_000002_230--Hb_179118_010 Hb_000002_230--Hb_183209_020 Hb_004590_010 Hb_004590_010 Hb_000002_230--Hb_004590_010 Hb_183820_010 Hb_183820_010 Hb_000002_230--Hb_183820_010 Hb_001277_420 Hb_001277_420 Hb_005695_020--Hb_001277_420 Hb_010381_110 Hb_010381_110 Hb_005695_020--Hb_010381_110 Hb_004032_250 Hb_004032_250 Hb_005695_020--Hb_004032_250 Hb_000692_230 Hb_000692_230 Hb_005695_020--Hb_000692_230 Hb_064047_010 Hb_064047_010 Hb_005695_020--Hb_064047_010 Hb_000987_080 Hb_000987_080 Hb_000316_080--Hb_000987_080 Hb_013691_040 Hb_013691_040 Hb_000316_080--Hb_013691_040 Hb_000316_080--Hb_000922_290 Hb_000316_080--Hb_050898_010 Hb_001823_070 Hb_001823_070 Hb_000316_080--Hb_001823_070 Hb_002110_210 Hb_002110_210 Hb_000316_080--Hb_002110_210 Hb_002735_010 Hb_002735_010 Hb_140848_010--Hb_002735_010 Hb_001148_040 Hb_001148_040 Hb_140848_010--Hb_001148_040 Hb_015473_010 Hb_015473_010 Hb_140848_010--Hb_015473_010 Hb_000152_250 Hb_000152_250 Hb_140848_010--Hb_000152_250 Hb_140848_010--Hb_002110_210 Hb_001610_060 Hb_001610_060 Hb_000720_060--Hb_001610_060 Hb_001013_060 Hb_001013_060 Hb_000720_060--Hb_001013_060 Hb_000720_060--Hb_000203_150 Hb_000069_630 Hb_000069_630 Hb_000720_060--Hb_000069_630 Hb_001775_060 Hb_001775_060 Hb_000720_060--Hb_001775_060 Hb_016120_020 Hb_016120_020 Hb_000720_060--Hb_016120_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.21524 61.4048 6.37968 72.866 1.98392 0.709325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.078714 0.371293 0.553321 28.553 6.50226

CAGE analysis