Hb_002053_110

Information

Type -
Description -
Location Contig2053: 120451-132869
Sequence    

Annotation

kegg
ID rcu:RCOM_0237710
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002533784.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SA76
description Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1
trembl
ID B9T6B9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0237710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21173: 120733-121229 , PASA_asmbl_21174: 121408-124023 , PASA_asmbl_21175: 121904-124026 , PASA_asmbl_21176: 124887-125297 , PASA_asmbl_21177: 126017-130682 , PASA_asmbl_21178: 131500-131783 , PASA_asmbl_21179: 130784-132833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_110 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000363_060 0.0943443543 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_000816_100 0.1088169987 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001220_050 0.110825674 - - DNA-damage-inducible protein f, putative [Ricinus communis]
5 Hb_007769_040 0.1110130541 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_000033_110 0.1125198696 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
7 Hb_001660_120 0.1194280366 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
8 Hb_000015_100 0.1201618697 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_001089_060 0.1225634589 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
10 Hb_009020_040 0.1226123544 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
11 Hb_002217_260 0.1227531335 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
12 Hb_025477_050 0.1239135191 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_093458_060 0.1239742798 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
14 Hb_000948_170 0.1251902709 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
15 Hb_000023_370 0.1263346771 - - -
16 Hb_021346_030 0.1263737365 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
17 Hb_013405_080 0.1271007693 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
18 Hb_048141_020 0.1272142327 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
19 Hb_000084_280 0.1275147134 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
20 Hb_002685_060 0.1298184672 - - 30S ribosomal protein S5, putative [Ricinus communis]

Gene co-expression network

sample Hb_002053_110 Hb_002053_110 Hb_000363_060 Hb_000363_060 Hb_002053_110--Hb_000363_060 Hb_000816_100 Hb_000816_100 Hb_002053_110--Hb_000816_100 Hb_001220_050 Hb_001220_050 Hb_002053_110--Hb_001220_050 Hb_007769_040 Hb_007769_040 Hb_002053_110--Hb_007769_040 Hb_000033_110 Hb_000033_110 Hb_002053_110--Hb_000033_110 Hb_001660_120 Hb_001660_120 Hb_002053_110--Hb_001660_120 Hb_000363_060--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_031042_060 Hb_031042_060 Hb_000363_060--Hb_031042_060 Hb_001472_160 Hb_001472_160 Hb_000363_060--Hb_001472_160 Hb_000331_130 Hb_000331_130 Hb_000363_060--Hb_000331_130 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_001259_020 Hb_001259_020 Hb_000816_100--Hb_001259_020 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060 Hb_000345_370 Hb_000345_370 Hb_001220_050--Hb_000345_370 Hb_001220_050--Hb_007769_040 Hb_009020_040 Hb_009020_040 Hb_001220_050--Hb_009020_040 Hb_011861_050 Hb_011861_050 Hb_001220_050--Hb_011861_050 Hb_001723_030 Hb_001723_030 Hb_001220_050--Hb_001723_030 Hb_006198_130 Hb_006198_130 Hb_001220_050--Hb_006198_130 Hb_007769_040--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007769_040--Hb_000589_110 Hb_007769_040--Hb_000345_370 Hb_000479_170 Hb_000479_170 Hb_007769_040--Hb_000479_170 Hb_013405_080 Hb_013405_080 Hb_007769_040--Hb_013405_080 Hb_000033_110--Hb_013405_080 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000320_470 Hb_000320_470 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_026053_040 Hb_026053_040 Hb_000033_110--Hb_026053_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_001660_120--Hb_013405_080 Hb_001662_140 Hb_001662_140 Hb_001660_120--Hb_001662_140 Hb_001660_120--Hb_000331_130 Hb_000221_140 Hb_000221_140 Hb_001660_120--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001660_120--Hb_033312_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.28715 2.1155 6.38343 3.49614 5.74213 6.17882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56126 2.35316 3.48292 2.19981 15.2021

CAGE analysis