Hb_002053_150

Information

Type -
Description -
Location Contig2053: 165847-166254
Sequence    

Annotation

kegg
ID rcu:RCOM_0771300
description small nuclear ribonucleoprotein-associated protein, putative
nr
ID XP_012075536.1
description PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
swissprot
ID Q9N1Q0
description Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1
trembl
ID A0A067KSP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09152 PE=4 SV=1
Gene Ontology
ID GO:0005730
description small nuclear ribonucleoprotein-associated protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_150 0.0 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
2 Hb_001998_240 0.0556229039 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
3 Hb_006816_280 0.0634194257 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
4 Hb_003228_110 0.0693427369 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
5 Hb_003411_040 0.0786696045 - - unnamed protein product [Coffea canephora]
6 Hb_003494_230 0.0792818064 - - starch synthase isoform II [Manihot esculenta]
7 Hb_001541_290 0.0803676276 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
8 Hb_001105_020 0.0813623159 - - expressed protein, putative [Ricinus communis]
9 Hb_003943_110 0.0826213168 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
10 Hb_000406_200 0.0862777215 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
11 Hb_000006_040 0.0886352864 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_027472_070 0.0899970743 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
13 Hb_000614_240 0.0927477414 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
14 Hb_001009_280 0.0929557673 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
15 Hb_001671_100 0.0931932293 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
16 Hb_001999_310 0.0937715762 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
17 Hb_002456_010 0.0939868795 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
18 Hb_001417_030 0.0948385589 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
19 Hb_002007_080 0.094947232 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
20 Hb_000473_110 0.0959465124 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]

Gene co-expression network

sample Hb_002053_150 Hb_002053_150 Hb_001998_240 Hb_001998_240 Hb_002053_150--Hb_001998_240 Hb_006816_280 Hb_006816_280 Hb_002053_150--Hb_006816_280 Hb_003228_110 Hb_003228_110 Hb_002053_150--Hb_003228_110 Hb_003411_040 Hb_003411_040 Hb_002053_150--Hb_003411_040 Hb_003494_230 Hb_003494_230 Hb_002053_150--Hb_003494_230 Hb_001541_290 Hb_001541_290 Hb_002053_150--Hb_001541_290 Hb_001998_240--Hb_006816_280 Hb_004787_050 Hb_004787_050 Hb_001998_240--Hb_004787_050 Hb_003058_260 Hb_003058_260 Hb_001998_240--Hb_003058_260 Hb_003943_110 Hb_003943_110 Hb_001998_240--Hb_003943_110 Hb_002675_130 Hb_002675_130 Hb_001998_240--Hb_002675_130 Hb_027472_070 Hb_027472_070 Hb_006816_280--Hb_027472_070 Hb_001105_020 Hb_001105_020 Hb_006816_280--Hb_001105_020 Hb_000261_480 Hb_000261_480 Hb_006816_280--Hb_000261_480 Hb_004208_050 Hb_004208_050 Hb_006816_280--Hb_004208_050 Hb_002007_080 Hb_002007_080 Hb_003228_110--Hb_002007_080 Hb_002071_070 Hb_002071_070 Hb_003228_110--Hb_002071_070 Hb_000778_010 Hb_000778_010 Hb_003228_110--Hb_000778_010 Hb_003228_110--Hb_001998_240 Hb_002456_010 Hb_002456_010 Hb_003228_110--Hb_002456_010 Hb_001814_030 Hb_001814_030 Hb_003411_040--Hb_001814_030 Hb_000792_010 Hb_000792_010 Hb_003411_040--Hb_000792_010 Hb_000592_030 Hb_000592_030 Hb_003411_040--Hb_000592_030 Hb_004567_090 Hb_004567_090 Hb_003411_040--Hb_004567_090 Hb_000111_290 Hb_000111_290 Hb_003411_040--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003411_040--Hb_001417_030 Hb_003494_230--Hb_001541_290 Hb_008033_040 Hb_008033_040 Hb_003494_230--Hb_008033_040 Hb_001671_100 Hb_001671_100 Hb_003494_230--Hb_001671_100 Hb_070256_010 Hb_070256_010 Hb_003494_230--Hb_070256_010 Hb_003494_230--Hb_001998_240 Hb_001541_290--Hb_002675_130 Hb_001541_290--Hb_003228_110 Hb_001946_290 Hb_001946_290 Hb_001541_290--Hb_001946_290 Hb_001541_290--Hb_001998_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.51587 8.07262 8.71029 6.21404 8.11421 6.97399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18127 8.29008 10.9216 15.1211 10.9334

CAGE analysis