Hb_002053_190

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2053: 240479-242732
Sequence    

Annotation

kegg
ID rcu:RCOM_0825660
description hypothetical protein
nr
ID XP_012078695.1
description PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
swissprot
ID Q94DH3
description Transcription factor PCL1 OS=Oryza sativa subsp. japonica GN=PCL1 PE=2 SV=1
trembl
ID A0A067KBG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13263 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21189: 241389-241918 , PASA_asmbl_21190: 242133-242747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_190 0.0 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
2 Hb_002890_330 0.0624274711 - - caspase, putative [Ricinus communis]
3 Hb_002043_070 0.0635427308 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
4 Hb_001405_170 0.0638507722 - - aspartyl protease family protein [Populus trichocarpa]
5 Hb_002960_030 0.0642934355 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
6 Hb_002168_070 0.0763642601 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
7 Hb_001541_210 0.0865691951 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
8 Hb_009771_040 0.0942776285 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
9 Hb_000020_210 0.0985602272 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
10 Hb_017862_030 0.0988829104 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
11 Hb_009222_040 0.0992087117 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
12 Hb_000434_060 0.0992650814 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
13 Hb_005741_030 0.100800995 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
14 Hb_001427_100 0.1015432392 - - acc synthase, putative [Ricinus communis]
15 Hb_000849_030 0.102801695 - - PREDICTED: fimbrin-2 [Jatropha curcas]
16 Hb_039946_060 0.1094013153 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
17 Hb_009785_030 0.1127426791 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
18 Hb_081864_010 0.1147607511 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_005211_210 0.1155733039 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
20 Hb_002534_070 0.1156098417 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]

Gene co-expression network

sample Hb_002053_190 Hb_002053_190 Hb_002890_330 Hb_002890_330 Hb_002053_190--Hb_002890_330 Hb_002043_070 Hb_002043_070 Hb_002053_190--Hb_002043_070 Hb_001405_170 Hb_001405_170 Hb_002053_190--Hb_001405_170 Hb_002960_030 Hb_002960_030 Hb_002053_190--Hb_002960_030 Hb_002168_070 Hb_002168_070 Hb_002053_190--Hb_002168_070 Hb_001541_210 Hb_001541_210 Hb_002053_190--Hb_001541_210 Hb_002890_330--Hb_002043_070 Hb_002890_330--Hb_001541_210 Hb_002890_330--Hb_002960_030 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_002043_070--Hb_002168_070 Hb_005211_210 Hb_005211_210 Hb_002043_070--Hb_005211_210 Hb_000434_060 Hb_000434_060 Hb_002043_070--Hb_000434_060 Hb_009771_040 Hb_009771_040 Hb_002043_070--Hb_009771_040 Hb_001405_170--Hb_002960_030 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_001405_170--Hb_001541_210 Hb_001405_170--Hb_009771_040 Hb_001405_170--Hb_002168_070 Hb_002534_070 Hb_002534_070 Hb_002960_030--Hb_002534_070 Hb_000983_130 Hb_000983_130 Hb_002960_030--Hb_000983_130 Hb_002960_030--Hb_001541_210 Hb_002168_070--Hb_009771_040 Hb_002168_070--Hb_000434_060 Hb_002168_070--Hb_005211_210 Hb_005741_030 Hb_005741_030 Hb_001541_210--Hb_005741_030 Hb_001541_210--Hb_002043_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167095 1.57919 1.40414 4.20726 0.0386454 0.0235718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.182644 2.01719

CAGE analysis