Hb_002054_040

Information

Type -
Description -
Location Contig2054: 80195-87515
Sequence    

Annotation

kegg
ID rcu:RCOM_0271960
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_012081185.1
description PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
swissprot
ID Q9LHS0
description Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1
trembl
ID A0A067K5G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17025 PE=4 SV=1
Gene Ontology
ID GO:0005886
description clathrin assembly protein at5g35200

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21194: 81086-87457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002054_040 0.0 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
2 Hb_000166_110 0.0742181616 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
3 Hb_000031_220 0.0743908816 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
4 Hb_000260_220 0.0766616137 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
5 Hb_002374_050 0.0772498068 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
6 Hb_000134_090 0.0776275899 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
7 Hb_002982_040 0.0803515387 - - mta/sah nucleosidase, putative [Ricinus communis]
8 Hb_003362_040 0.0829282724 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
9 Hb_010931_080 0.0842840101 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
10 Hb_002163_030 0.0844646163 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
11 Hb_011318_010 0.0845897713 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
12 Hb_004204_020 0.0854769228 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
13 Hb_001663_030 0.0857413941 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_004370_030 0.0864642824 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
15 Hb_002027_270 0.0894754044 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
16 Hb_007741_020 0.0895020146 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
17 Hb_000915_050 0.0920886212 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001124_160 0.0921055707 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
19 Hb_000046_440 0.0922713733 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
20 Hb_004619_050 0.0936553227 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002054_040 Hb_002054_040 Hb_000166_110 Hb_000166_110 Hb_002054_040--Hb_000166_110 Hb_000031_220 Hb_000031_220 Hb_002054_040--Hb_000031_220 Hb_000260_220 Hb_000260_220 Hb_002054_040--Hb_000260_220 Hb_002374_050 Hb_002374_050 Hb_002054_040--Hb_002374_050 Hb_000134_090 Hb_000134_090 Hb_002054_040--Hb_000134_090 Hb_002982_040 Hb_002982_040 Hb_002054_040--Hb_002982_040 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_005839_060 Hb_005839_060 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_000031_220--Hb_002982_040 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_000031_220--Hb_000260_220 Hb_000003_480 Hb_000003_480 Hb_000031_220--Hb_000003_480 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_006114_030 Hb_006114_030 Hb_002374_050--Hb_006114_030 Hb_004689_050 Hb_004689_050 Hb_002374_050--Hb_004689_050 Hb_002374_050--Hb_001124_160 Hb_100215_010 Hb_100215_010 Hb_002374_050--Hb_100215_010 Hb_002030_030 Hb_002030_030 Hb_000134_090--Hb_002030_030 Hb_001862_190 Hb_001862_190 Hb_000134_090--Hb_001862_190 Hb_004096_030 Hb_004096_030 Hb_000134_090--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_000134_090--Hb_004934_090 Hb_006922_100 Hb_006922_100 Hb_000134_090--Hb_006922_100 Hb_004724_200 Hb_004724_200 Hb_000134_090--Hb_004724_200 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_185830_020 Hb_185830_020 Hb_002982_040--Hb_185830_020 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.3102 20.1242 10.3495 19.4241 26.1523 57.6352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.279 15.4173 29.1676 24.0969 16.3216

CAGE analysis