Hb_002054_090

Information

Type -
Description -
Location Contig2054: 120101-120694
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010958mg
description hypothetical protein
nr
ID XP_012446488.1
description PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
swissprot
ID Q00451
description 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1
trembl
ID A0A0D2THG5
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G015500 PE=4 SV=1
Gene Ontology
ID GO:0009507
description kda proline-rich

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002054_090 0.0 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
2 Hb_004631_030 0.0906408344 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
3 Hb_041063_010 0.1078358378 - - Disease resistance protein RFL1, putative [Ricinus communis]
4 Hb_000297_220 0.1130198806 - - SAUR family protein [Theobroma cacao]
5 Hb_060236_010 0.1214503907 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
6 Hb_004241_050 0.1325181554 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
7 Hb_000059_110 0.1345931169 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
8 Hb_012516_030 0.1353651718 - - PREDICTED: non-specific lipid-transfer protein 2 {ECO:0000303
9 Hb_131417_010 0.1362779418 - - hypothetical protein POPTR_0011s066602g, partial [Populus trichocarpa]
10 Hb_000510_210 0.1418986232 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
11 Hb_000956_060 0.1424409208 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_001369_530 0.145528186 - - 21 kDa protein precursor, putative [Ricinus communis]
13 Hb_000429_030 0.1456068338 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_082733_010 0.1468194445 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
15 Hb_000566_170 0.1468713618 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
16 Hb_000032_330 0.1494882347 - - conserved hypothetical protein [Ricinus communis]
17 Hb_080068_010 0.1506403798 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
18 Hb_000098_210 0.1557255294 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
19 Hb_001821_030 0.1557934928 - - hypothetical protein JCGZ_13357 [Jatropha curcas]
20 Hb_001115_010 0.1568638531 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002054_090 Hb_002054_090 Hb_004631_030 Hb_004631_030 Hb_002054_090--Hb_004631_030 Hb_041063_010 Hb_041063_010 Hb_002054_090--Hb_041063_010 Hb_000297_220 Hb_000297_220 Hb_002054_090--Hb_000297_220 Hb_060236_010 Hb_060236_010 Hb_002054_090--Hb_060236_010 Hb_004241_050 Hb_004241_050 Hb_002054_090--Hb_004241_050 Hb_000059_110 Hb_000059_110 Hb_002054_090--Hb_000059_110 Hb_004631_030--Hb_000297_220 Hb_012516_030 Hb_012516_030 Hb_004631_030--Hb_012516_030 Hb_000566_170 Hb_000566_170 Hb_004631_030--Hb_000566_170 Hb_000956_060 Hb_000956_060 Hb_004631_030--Hb_000956_060 Hb_000510_210 Hb_000510_210 Hb_004631_030--Hb_000510_210 Hb_000032_330 Hb_000032_330 Hb_041063_010--Hb_000032_330 Hb_041063_010--Hb_060236_010 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_041063_010--Hb_004241_050 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010 Hb_000297_220--Hb_012516_030 Hb_000297_220--Hb_000956_060 Hb_000297_220--Hb_041063_010 Hb_000306_050 Hb_000306_050 Hb_000297_220--Hb_000306_050 Hb_082733_010 Hb_082733_010 Hb_060236_010--Hb_082733_010 Hb_060236_010--Hb_004241_050 Hb_000563_620 Hb_000563_620 Hb_060236_010--Hb_000563_620 Hb_007007_020 Hb_007007_020 Hb_060236_010--Hb_007007_020 Hb_004241_050--Hb_000059_110 Hb_001115_010 Hb_001115_010 Hb_004241_050--Hb_001115_010 Hb_004241_050--Hb_082733_010 Hb_004241_050--Hb_000563_620 Hb_000521_350 Hb_000521_350 Hb_000059_110--Hb_000521_350 Hb_004724_010 Hb_004724_010 Hb_000059_110--Hb_004724_010 Hb_000146_100 Hb_000146_100 Hb_000059_110--Hb_000146_100 Hb_000658_020 Hb_000658_020 Hb_000059_110--Hb_000658_020 Hb_000059_110--Hb_041063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.797731 74.4767 25.1467 389.999 1.44501 2.24646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 150.732 0.466918

CAGE analysis