Hb_002056_040

Information

Type -
Description -
Location Contig2056: 60149-61324
Sequence    

Annotation

kegg
ID rcu:RCOM_0481370
description arsenical pump-driving atpase, putative (EC:3.6.3.16)
nr
ID XP_002530933.1
description arsenical pump-driving atpase, putative [Ricinus communis]
swissprot
ID Q58542
description Putative arsenical pump-driving ATPase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1142 PE=1 SV=1
trembl
ID B9SY64
description Arsenical pump-driving atpase, putative OS=Ricinus communis GN=RCOM_0481370 PE=4 SV=1
Gene Ontology
ID GO:0005524
description arsenical pump-driving atpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002056_040 0.0 - - arsenical pump-driving atpase, putative [Ricinus communis]
2 Hb_000140_020 0.0004682782 - - BnaA02g09930D [Brassica napus]
3 Hb_099335_030 0.0023191974 - - hypothetical protein M569_10107, partial [Genlisea aurea]
4 Hb_003598_060 0.0098937603 - - hypothetical protein POPTR_0006s25370g [Populus trichocarpa]
5 Hb_003020_320 0.0144252095 - - -
6 Hb_000877_010 0.0371038008 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
7 Hb_001068_060 0.0397404987 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_000032_120 0.0400094507 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
9 Hb_099335_020 0.0416734041 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
10 Hb_061183_010 0.0478929805 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
11 Hb_001946_230 0.0554093409 - - -
12 Hb_000313_160 0.057621458 - - BnaC02g20570D [Brassica napus]
13 Hb_000337_020 0.0640025207 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 isoform X2 [Jatropha curcas]
14 Hb_001281_030 0.0658772431 - - hypothetical protein POPTR_0010s18450g [Populus trichocarpa]
15 Hb_003685_020 0.0744027631 - - PREDICTED: laccase-14-like [Fragaria vesca subsp. vesca]
16 Hb_124540_010 0.0750245197 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
17 Hb_034168_020 0.0773663172 - - putative uncharacterized protein (mitochondrion) [Hevea brasiliensis]
18 Hb_010904_020 0.0773708893 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
19 Hb_118410_020 0.0823631789 - - PREDICTED: UDP-glycosyltransferase 76C4 [Vitis vinifera]
20 Hb_001543_010 0.0834808336 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002056_040 Hb_002056_040 Hb_000140_020 Hb_000140_020 Hb_002056_040--Hb_000140_020 Hb_099335_030 Hb_099335_030 Hb_002056_040--Hb_099335_030 Hb_003598_060 Hb_003598_060 Hb_002056_040--Hb_003598_060 Hb_003020_320 Hb_003020_320 Hb_002056_040--Hb_003020_320 Hb_000877_010 Hb_000877_010 Hb_002056_040--Hb_000877_010 Hb_001068_060 Hb_001068_060 Hb_002056_040--Hb_001068_060 Hb_000140_020--Hb_099335_030 Hb_000140_020--Hb_003598_060 Hb_000140_020--Hb_003020_320 Hb_000140_020--Hb_000877_010 Hb_000140_020--Hb_001068_060 Hb_099335_030--Hb_003020_320 Hb_099335_030--Hb_003598_060 Hb_099335_030--Hb_000877_010 Hb_099335_030--Hb_001068_060 Hb_003598_060--Hb_003020_320 Hb_003598_060--Hb_000877_010 Hb_003598_060--Hb_001068_060 Hb_061183_010 Hb_061183_010 Hb_003020_320--Hb_061183_010 Hb_001946_230 Hb_001946_230 Hb_003020_320--Hb_001946_230 Hb_000877_010--Hb_001068_060 Hb_000032_120 Hb_000032_120 Hb_000877_010--Hb_000032_120 Hb_099335_020 Hb_099335_020 Hb_000877_010--Hb_099335_020 Hb_001068_060--Hb_000032_120 Hb_001068_060--Hb_099335_020 Hb_124540_010 Hb_124540_010 Hb_001068_060--Hb_124540_010 Hb_010904_020 Hb_010904_020 Hb_001068_060--Hb_010904_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.108814 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.128821

CAGE analysis