Hb_002056_090

Information

Type transcription factor
Description TF Family: GNAT
Location Contig2056: 91627-92325
Sequence    

Annotation

kegg
ID rcu:RCOM_0263630
description Tyramine N-feruloyltransferase 4/11, putative (EC:2.3.1.110)
nr
ID XP_012093286.1
description PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
swissprot
ID Q9ZV06
description Probable acetyltransferase NATA1-like OS=Arabidopsis thaliana GN=At2g39020 PE=2 SV=1
trembl
ID A0A067LIG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20075 PE=4 SV=1
Gene Ontology
ID GO:0008080
description probable acetyltransferase nata1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21206: 91442-92369
cDNA
(Sanger)
(ID:Location)		 005_G06.ab1: 91551-92369 , 023_A17.ab1: 91879-92369

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002056_090 0.0 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
2 Hb_020831_030 0.0495104279 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003640_040 0.0498253537 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
4 Hb_001195_530 0.0566061732 - - conserved hypothetical protein [Ricinus communis]
5 Hb_105105_010 0.0720113672 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
6 Hb_000087_060 0.0734434344 - - protein transporter, putative [Ricinus communis]
7 Hb_005137_040 0.07618752 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
8 Hb_021576_110 0.0771791568 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
9 Hb_004195_200 0.0790221858 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
10 Hb_000923_010 0.0792563975 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
11 Hb_002876_130 0.0793512768 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
12 Hb_002217_170 0.0813436549 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
13 Hb_000070_080 0.0818097346 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
14 Hb_001205_200 0.0836759343 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001408_140 0.0847131162 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
16 Hb_006922_010 0.0848591455 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
17 Hb_000076_160 0.0862362154 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
18 Hb_002492_010 0.086654315 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
19 Hb_004096_180 0.0868229514 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
20 Hb_001473_160 0.0873462385 - - Vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002056_090 Hb_002056_090 Hb_020831_030 Hb_020831_030 Hb_002056_090--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_002056_090--Hb_003640_040 Hb_001195_530 Hb_001195_530 Hb_002056_090--Hb_001195_530 Hb_105105_010 Hb_105105_010 Hb_002056_090--Hb_105105_010 Hb_000087_060 Hb_000087_060 Hb_002056_090--Hb_000087_060 Hb_005137_040 Hb_005137_040 Hb_002056_090--Hb_005137_040 Hb_020831_030--Hb_001195_530 Hb_020831_030--Hb_003640_040 Hb_000049_260 Hb_000049_260 Hb_020831_030--Hb_000049_260 Hb_004195_200 Hb_004195_200 Hb_020831_030--Hb_004195_200 Hb_013399_100 Hb_013399_100 Hb_020831_030--Hb_013399_100 Hb_003640_040--Hb_001195_530 Hb_003640_040--Hb_004195_200 Hb_000680_090 Hb_000680_090 Hb_003640_040--Hb_000680_090 Hb_000070_080 Hb_000070_080 Hb_003640_040--Hb_000070_080 Hb_001195_530--Hb_105105_010 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_105105_010--Hb_002205_250 Hb_105105_010--Hb_001408_140 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_005918_010 Hb_005918_010 Hb_005137_040--Hb_005918_010 Hb_000637_110 Hb_000637_110 Hb_005137_040--Hb_000637_110 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_005137_040--Hb_105105_010 Hb_000088_170 Hb_000088_170 Hb_005137_040--Hb_000088_170 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4285 43.5251 33.902 31.8106 29.7511 36.8506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7257 26.6388 32.9719 29.0172 15.5004

CAGE analysis