Hb_002056_100

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2056: 93421-104296
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23160g
description hypothetical protein
nr
ID XP_012093284.1
description PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
swissprot
ID Q6BDA0
description Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1
trembl
ID A0A067LAY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20073 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable lysine-specific demethylase elf6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21208: 96630-104095 , PASA_asmbl_21209: 98780-99905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002056_100 0.0 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
2 Hb_000806_030 0.0716584012 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
3 Hb_000645_130 0.0726214045 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
4 Hb_000500_300 0.0758938565 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
5 Hb_009302_030 0.0808220505 - - hypothetical protein RCOM_1176340 [Ricinus communis]
6 Hb_004659_090 0.0824924514 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
7 Hb_000030_140 0.0838049273 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
8 Hb_000179_190 0.0866922251 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
9 Hb_005834_040 0.0873641429 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
10 Hb_000445_060 0.0884558558 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
11 Hb_023226_070 0.0884781772 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001558_060 0.0919675336 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
13 Hb_003992_180 0.0953265706 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
14 Hb_000120_380 0.0953445036 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
15 Hb_005523_020 0.0964562253 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
16 Hb_000110_350 0.0972766473 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
17 Hb_001635_210 0.098348646 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
18 Hb_000836_540 0.0988186334 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
19 Hb_006615_030 0.0988313901 - - prolyl oligopeptidase family protein [Populus trichocarpa]
20 Hb_017214_040 0.1023622077 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002056_100 Hb_002056_100 Hb_000806_030 Hb_000806_030 Hb_002056_100--Hb_000806_030 Hb_000645_130 Hb_000645_130 Hb_002056_100--Hb_000645_130 Hb_000500_300 Hb_000500_300 Hb_002056_100--Hb_000500_300 Hb_009302_030 Hb_009302_030 Hb_002056_100--Hb_009302_030 Hb_004659_090 Hb_004659_090 Hb_002056_100--Hb_004659_090 Hb_000030_140 Hb_000030_140 Hb_002056_100--Hb_000030_140 Hb_000806_030--Hb_004659_090 Hb_000806_030--Hb_000645_130 Hb_001279_040 Hb_001279_040 Hb_000806_030--Hb_001279_040 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000806_030--Hb_003929_210 Hb_000645_130--Hb_009302_030 Hb_000958_050 Hb_000958_050 Hb_000645_130--Hb_000958_050 Hb_000645_130--Hb_004659_090 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000645_130--Hb_000500_300 Hb_001534_210 Hb_001534_210 Hb_000500_300--Hb_001534_210 Hb_005523_020 Hb_005523_020 Hb_000500_300--Hb_005523_020 Hb_000445_060 Hb_000445_060 Hb_000500_300--Hb_000445_060 Hb_003849_140 Hb_003849_140 Hb_000500_300--Hb_003849_140 Hb_009302_030--Hb_003939_060 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_170077_010 Hb_170077_010 Hb_004659_090--Hb_170077_010 Hb_004659_090--Hb_000958_050 Hb_004659_090--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_004659_090--Hb_000110_350 Hb_000260_760 Hb_000260_760 Hb_000030_140--Hb_000260_760 Hb_002461_020 Hb_002461_020 Hb_000030_140--Hb_002461_020 Hb_000996_020 Hb_000996_020 Hb_000030_140--Hb_000996_020 Hb_000035_100 Hb_000035_100 Hb_000030_140--Hb_000035_100 Hb_005333_140 Hb_005333_140 Hb_000030_140--Hb_005333_140 Hb_000030_140--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59946 16.5438 13.7576 5.35996 6.60656 5.48226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10314 3.70252 5.00121 5.42119 11.7676

CAGE analysis