Hb_002060_010

Information

Type -
Description -
Location Contig2060: 36877-42831
Sequence    

Annotation

kegg
ID rcu:RCOM_0614010
description nucleic acid binding protein, putative
nr
ID XP_012082647.1
description PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
swissprot
ID Q9LFD5
description Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1
trembl
ID A0A067JY86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19366 PE=4 SV=1
Gene Ontology
ID GO:0000166
description protein vip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21251: 37039-42745 , PASA_asmbl_21252: 41200-41604 , PASA_asmbl_21253: 39888-40099 , PASA_asmbl_21255: 38986-39445 , PASA_asmbl_21256: 40427-40712
cDNA
(Sanger)
(ID:Location)		 008_O10.ab1: 37041-42368 , 012_J07.ab1: 37041-42435 , 021_L18.ab1: 37053-42393 , 023_D24.ab1: 37041-42456 , 053_A21.ab1: 37041-42391 , 053_H06.ab1: 37041-42391 , 053_I10.ab1: 37041-42393

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002060_010 0.0 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
2 Hb_001718_030 0.0725369609 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
3 Hb_001188_030 0.0839413419 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
4 Hb_006256_030 0.0849010823 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
5 Hb_098315_020 0.0883480923 - - hypothetical protein M569_15712 [Genlisea aurea]
6 Hb_006355_040 0.0938523687 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
7 Hb_000327_380 0.0970951676 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
8 Hb_000505_130 0.0986918146 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
9 Hb_000155_160 0.0998494282 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
10 Hb_005460_060 0.1008011029 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
11 Hb_000009_290 0.1023255366 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
12 Hb_001016_100 0.1023916575 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
13 Hb_005843_140 0.102819092 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
14 Hb_002028_090 0.1037368921 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
15 Hb_000538_120 0.1040166766 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
16 Hb_163256_020 0.1055524093 - - fructokinase [Manihot esculenta]
17 Hb_002239_050 0.1065635507 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
18 Hb_044653_040 0.1071116257 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
19 Hb_006326_040 0.107550301 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004984_030 0.108041353 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002060_010 Hb_002060_010 Hb_001718_030 Hb_001718_030 Hb_002060_010--Hb_001718_030 Hb_001188_030 Hb_001188_030 Hb_002060_010--Hb_001188_030 Hb_006256_030 Hb_006256_030 Hb_002060_010--Hb_006256_030 Hb_098315_020 Hb_098315_020 Hb_002060_010--Hb_098315_020 Hb_006355_040 Hb_006355_040 Hb_002060_010--Hb_006355_040 Hb_000327_380 Hb_000327_380 Hb_002060_010--Hb_000327_380 Hb_001718_030--Hb_001188_030 Hb_001718_030--Hb_006355_040 Hb_001431_080 Hb_001431_080 Hb_001718_030--Hb_001431_080 Hb_000676_390 Hb_000676_390 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040 Hb_001188_030--Hb_000676_390 Hb_001188_030--Hb_001431_080 Hb_001188_030--Hb_006355_040 Hb_015299_030 Hb_015299_030 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_163256_020 Hb_163256_020 Hb_006256_030--Hb_163256_020 Hb_022318_020 Hb_022318_020 Hb_006256_030--Hb_022318_020 Hb_158445_010 Hb_158445_010 Hb_006256_030--Hb_158445_010 Hb_006256_030--Hb_001718_030 Hb_002260_010 Hb_002260_010 Hb_006256_030--Hb_002260_010 Hb_098315_020--Hb_015299_030 Hb_005460_060 Hb_005460_060 Hb_098315_020--Hb_005460_060 Hb_004984_030 Hb_004984_030 Hb_098315_020--Hb_004984_030 Hb_098315_020--Hb_001188_030 Hb_098315_020--Hb_001718_030 Hb_005843_140 Hb_005843_140 Hb_006355_040--Hb_005843_140 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070 Hb_000009_290 Hb_000009_290 Hb_000327_380--Hb_000009_290 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_010560_030 Hb_010560_030 Hb_000327_380--Hb_010560_030 Hb_000327_230 Hb_000327_230 Hb_000327_380--Hb_000327_230 Hb_003362_030 Hb_003362_030 Hb_000327_380--Hb_003362_030 Hb_000045_300 Hb_000045_300 Hb_000327_380--Hb_000045_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7045 47.3957 79.014 80.5672 17.3032 27.3661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.884 143.586 68.3249 47.2705 43.7365

CAGE analysis