Hb_002060_040

Information

Type -
Description -
Location Contig2060: 110922-114805
Sequence    

Annotation

kegg
ID vvi:104880714
description uncharacterized LOC104880714
nr
ID AAK52163.1
description putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID Q99337
description Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-NL2 PE=3 SV=1
trembl
ID Q94H33
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0077G22.10 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002060_040 0.0 - - putative polyprotein [Oryza sativa Japonica Group]
2 Hb_033066_030 0.0007593124 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
3 Hb_031866_030 0.013861916 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
4 Hb_009152_030 0.0518552649 - - hypothetical protein L484_026849 [Morus notabilis]
5 Hb_000009_010 0.1141029757 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
6 Hb_001629_040 0.1487168938 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
7 Hb_000789_140 0.1689585839 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_003567_020 0.1806868369 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000155_240 0.2130762302 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
10 Hb_180367_010 0.2199687372 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
11 Hb_006474_010 0.2238444802 - - hypothetical protein VITISV_032357 [Vitis vinifera]
12 Hb_003739_040 0.2247046227 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
13 Hb_128193_010 0.2286488065 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
14 Hb_121041_010 0.238407809 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
15 Hb_017604_030 0.2437765849 - - -
16 Hb_038508_010 0.25059302 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_005379_010 0.25944363 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000646_030 0.2594441591 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_025662_020 0.2594442257 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003797_030 0.2594445421 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002060_040 Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_002060_040--Hb_033066_030 Hb_031866_030 Hb_031866_030 Hb_002060_040--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_002060_040--Hb_009152_030 Hb_000009_010 Hb_000009_010 Hb_002060_040--Hb_000009_010 Hb_001629_040 Hb_001629_040 Hb_002060_040--Hb_001629_040 Hb_000789_140 Hb_000789_140 Hb_002060_040--Hb_000789_140 Hb_033066_030--Hb_031866_030 Hb_033066_030--Hb_009152_030 Hb_033066_030--Hb_000009_010 Hb_033066_030--Hb_001629_040 Hb_033066_030--Hb_000789_140 Hb_031866_030--Hb_009152_030 Hb_031866_030--Hb_000009_010 Hb_031866_030--Hb_001629_040 Hb_031866_030--Hb_000789_140 Hb_009152_030--Hb_000009_010 Hb_009152_030--Hb_000789_140 Hb_009152_030--Hb_001629_040 Hb_000009_010--Hb_001629_040 Hb_128193_010 Hb_128193_010 Hb_000009_010--Hb_128193_010 Hb_001629_040--Hb_128193_010 Hb_000155_240 Hb_000155_240 Hb_000789_140--Hb_000155_240 Hb_038508_010 Hb_038508_010 Hb_000789_140--Hb_038508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.012471 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00882438 0.047497

CAGE analysis