Hb_002061_040

Information

Type -
Description -
Location Contig2061: 98434-99493
Sequence    

Annotation

kegg
ID pxb:103956286
description TMV resistance protein N-like
nr
ID XP_009366533.1
description PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9T115
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0458060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21259: 96403-99732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002061_040 0.0 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
2 Hb_001653_020 0.0633777035 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
3 Hb_012053_070 0.0717456023 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
4 Hb_007416_320 0.0718135394 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001519_050 0.0751191017 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
6 Hb_000009_460 0.0762749283 - - conserved hypothetical protein [Ricinus communis]
7 Hb_172426_040 0.0763971552 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
8 Hb_000010_460 0.0771867293 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
9 Hb_003787_010 0.0774691115 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
10 Hb_004218_110 0.0777660815 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
11 Hb_000058_060 0.0780759141 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
12 Hb_159809_020 0.078322757 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005736_060 0.078527931 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_000125_190 0.0806860687 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
15 Hb_003050_220 0.0811494944 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
16 Hb_000270_370 0.0819574129 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
17 Hb_001369_690 0.0822183861 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
18 Hb_000005_080 0.0837310276 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
19 Hb_020400_050 0.0846551443 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
20 Hb_027073_040 0.0852972551 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002061_040 Hb_002061_040 Hb_001653_020 Hb_001653_020 Hb_002061_040--Hb_001653_020 Hb_012053_070 Hb_012053_070 Hb_002061_040--Hb_012053_070 Hb_007416_320 Hb_007416_320 Hb_002061_040--Hb_007416_320 Hb_001519_050 Hb_001519_050 Hb_002061_040--Hb_001519_050 Hb_000009_460 Hb_000009_460 Hb_002061_040--Hb_000009_460 Hb_172426_040 Hb_172426_040 Hb_002061_040--Hb_172426_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_000373_130 Hb_000373_130 Hb_001519_050--Hb_000373_130 Hb_000125_190 Hb_000125_190 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_000009_460--Hb_000058_060 Hb_000009_460--Hb_159809_020 Hb_000574_480 Hb_000574_480 Hb_000009_460--Hb_000574_480 Hb_000009_460--Hb_007416_320 Hb_000009_460--Hb_003787_010 Hb_000307_090 Hb_000307_090 Hb_000009_460--Hb_000307_090 Hb_172426_040--Hb_003918_010 Hb_172426_040--Hb_003787_010 Hb_006059_050 Hb_006059_050 Hb_172426_040--Hb_006059_050 Hb_000020_060 Hb_000020_060 Hb_172426_040--Hb_000020_060 Hb_000982_090 Hb_000982_090 Hb_172426_040--Hb_000982_090 Hb_004116_190 Hb_004116_190 Hb_172426_040--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5547 22.4298 13.3137 27.5524 23.7494 32.7541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.9054 58.7648 45.9972 37.3114 17.582

CAGE analysis