Hb_002063_020

Information

Type -
Description -
Location Contig2063: 54541-57310
Sequence    

Annotation

kegg
ID rcu:RCOM_0512950
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067167.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
swissprot
ID Q0WPZ6
description Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
trembl
ID B9SMD1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0512950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21261: 55261-55653 , PASA_asmbl_21263: 56274-56661 , PASA_asmbl_21264: 56689-67201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002063_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
2 Hb_003253_040 0.0653817639 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
3 Hb_000388_090 0.0663455449 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
4 Hb_000366_040 0.0666994543 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
5 Hb_002099_080 0.0730374591 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
6 Hb_002942_100 0.0741120962 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
7 Hb_000352_190 0.0783906168 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
8 Hb_010174_110 0.0803686387 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
9 Hb_009296_040 0.0807035682 - - hypothetical protein L484_007435 [Morus notabilis]
10 Hb_027472_070 0.0823823228 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
11 Hb_028912_050 0.0848452637 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
12 Hb_003411_040 0.0849948175 - - unnamed protein product [Coffea canephora]
13 Hb_002055_040 0.0852889499 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
14 Hb_003294_090 0.0866702114 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004712_130 0.0873013479 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
16 Hb_003168_110 0.088154163 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
17 Hb_001998_240 0.0885039527 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
18 Hb_000215_140 0.0892517492 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
19 Hb_002740_110 0.0893781344 - - PREDICTED: phytochrome A [Jatropha curcas]
20 Hb_004225_050 0.089400132 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002063_020 Hb_002063_020 Hb_003253_040 Hb_003253_040 Hb_002063_020--Hb_003253_040 Hb_000388_090 Hb_000388_090 Hb_002063_020--Hb_000388_090 Hb_000366_040 Hb_000366_040 Hb_002063_020--Hb_000366_040 Hb_002099_080 Hb_002099_080 Hb_002063_020--Hb_002099_080 Hb_002942_100 Hb_002942_100 Hb_002063_020--Hb_002942_100 Hb_000352_190 Hb_000352_190 Hb_002063_020--Hb_000352_190 Hb_002740_110 Hb_002740_110 Hb_003253_040--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003253_040--Hb_010174_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_003253_040--Hb_002942_100 Hb_004143_130 Hb_004143_130 Hb_003253_040--Hb_004143_130 Hb_001357_020 Hb_001357_020 Hb_000388_090--Hb_001357_020 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_000366_040--Hb_000352_190 Hb_000366_040--Hb_000388_090 Hb_004712_130 Hb_004712_130 Hb_000366_040--Hb_004712_130 Hb_000366_040--Hb_002099_080 Hb_000366_040--Hb_005736_020 Hb_007820_010 Hb_007820_010 Hb_002099_080--Hb_007820_010 Hb_002055_040 Hb_002055_040 Hb_002099_080--Hb_002055_040 Hb_002667_050 Hb_002667_050 Hb_002099_080--Hb_002667_050 Hb_009296_040 Hb_009296_040 Hb_002099_080--Hb_009296_040 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_002942_100--Hb_006915_030 Hb_002942_100--Hb_004143_130 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170 Hb_000352_190--Hb_028912_050 Hb_005686_090 Hb_005686_090 Hb_000352_190--Hb_005686_090 Hb_004225_050 Hb_004225_050 Hb_000352_190--Hb_004225_050 Hb_008959_010 Hb_008959_010 Hb_000352_190--Hb_008959_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80713 2.11352 1.21432 1.5711 2.02308 2.12705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17208 1.44539 3.28092 2.66194 2.72178

CAGE analysis