Hb_002066_050

Information

Type transcription factor
Description TF Family: ERF
Location Contig2066: 57730-58698
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14840g
description hypothetical protein
nr
ID XP_012066876.1
description PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
swissprot
ID Q9SZ06
description Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=1 SV=1
trembl
ID A0A067LCS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01609 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf109-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21273: 57808-58858
cDNA
(Sanger)
(ID:Location)		 005_J06.ab1: 57808-58554

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002066_050 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
2 Hb_000665_090 0.0672892766 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000925_110 0.0789049783 - - Spotted leaf protein, putative [Ricinus communis]
4 Hb_000714_080 0.0847792218 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
5 Hb_007546_010 0.0847986921 - - unnamed protein product [Vitis vinifera]
6 Hb_000627_130 0.1018944676 - - Polcalcin Jun o, putative [Ricinus communis]
7 Hb_000904_110 0.1076546999 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
8 Hb_001511_200 0.1086315524 - - Embryonic abundant protein, putative [Ricinus communis]
9 Hb_000808_090 0.1086557638 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
10 Hb_128851_020 0.1115418756 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000164_160 0.1138335928 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
12 Hb_124953_010 0.1142491679 - - hypothetical protein RCOM_1314600 [Ricinus communis]
13 Hb_003207_230 0.1214735942 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
14 Hb_116103_010 0.1226290632 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
15 Hb_004724_310 0.12281411 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
16 Hb_008637_020 0.125223183 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002542_030 0.1266158759 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
18 Hb_001677_140 0.1274144878 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
19 Hb_099188_010 0.1282003082 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_182167_010 0.1313362562 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_002066_050 Hb_002066_050 Hb_000665_090 Hb_000665_090 Hb_002066_050--Hb_000665_090 Hb_000925_110 Hb_000925_110 Hb_002066_050--Hb_000925_110 Hb_000714_080 Hb_000714_080 Hb_002066_050--Hb_000714_080 Hb_007546_010 Hb_007546_010 Hb_002066_050--Hb_007546_010 Hb_000627_130 Hb_000627_130 Hb_002066_050--Hb_000627_130 Hb_000904_110 Hb_000904_110 Hb_002066_050--Hb_000904_110 Hb_000665_090--Hb_000714_080 Hb_000808_090 Hb_000808_090 Hb_000665_090--Hb_000808_090 Hb_000665_090--Hb_000925_110 Hb_101058_020 Hb_101058_020 Hb_000665_090--Hb_101058_020 Hb_000665_090--Hb_000904_110 Hb_000656_350 Hb_000656_350 Hb_000925_110--Hb_000656_350 Hb_004724_310 Hb_004724_310 Hb_000925_110--Hb_004724_310 Hb_000925_110--Hb_000714_080 Hb_096930_010 Hb_096930_010 Hb_000925_110--Hb_096930_010 Hb_000714_080--Hb_004724_310 Hb_008963_010 Hb_008963_010 Hb_000714_080--Hb_008963_010 Hb_000714_080--Hb_000904_110 Hb_000997_130 Hb_000997_130 Hb_007546_010--Hb_000997_130 Hb_046610_010 Hb_046610_010 Hb_007546_010--Hb_046610_010 Hb_164577_010 Hb_164577_010 Hb_007546_010--Hb_164577_010 Hb_001511_200 Hb_001511_200 Hb_007546_010--Hb_001511_200 Hb_008637_020 Hb_008637_020 Hb_007546_010--Hb_008637_020 Hb_007858_020 Hb_007858_020 Hb_000627_130--Hb_007858_020 Hb_124953_010 Hb_124953_010 Hb_000627_130--Hb_124953_010 Hb_029664_010 Hb_029664_010 Hb_000627_130--Hb_029664_010 Hb_001153_250 Hb_001153_250 Hb_000627_130--Hb_001153_250 Hb_109591_010 Hb_109591_010 Hb_000627_130--Hb_109591_010 Hb_005054_330 Hb_005054_330 Hb_000627_130--Hb_005054_330 Hb_116103_010 Hb_116103_010 Hb_000904_110--Hb_116103_010 Hb_064885_010 Hb_064885_010 Hb_000904_110--Hb_064885_010 Hb_173029_010 Hb_173029_010 Hb_000904_110--Hb_173029_010 Hb_004924_020 Hb_004924_020 Hb_000904_110--Hb_004924_020 Hb_002849_010 Hb_002849_010 Hb_000904_110--Hb_002849_010 Hb_000668_220 Hb_000668_220 Hb_000904_110--Hb_000668_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0287784 268.175 190.67 127.753 0 0.020271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.210845 0.456016 0.0761436 0.233582 12.0996

CAGE analysis