Hb_002066_080

Information

Type -
Description -
Location Contig2066: 104004-109181
Sequence    

Annotation

kegg
ID rcu:RCOM_0813600
description Protein CYPRO4, putative
nr
ID XP_012066878.1
description PREDICTED: protein CYPRO4 [Jatropha curcas]
swissprot
ID P40781
description Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1
trembl
ID A0A067L511
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01617 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21276: 104094-109079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002066_080 0.0 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
2 Hb_002392_030 0.0590975483 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
3 Hb_004629_010 0.0783446019 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
4 Hb_015099_010 0.0795761777 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
5 Hb_003029_130 0.0818537683 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
6 Hb_001221_160 0.0824892284 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_133047_010 0.0848203352 - - xanthine dehydrogenase, putative [Ricinus communis]
8 Hb_001178_150 0.0870101905 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
9 Hb_000313_340 0.0914430812 - - DNA repair protein xp-E, putative [Ricinus communis]
10 Hb_003124_130 0.0925315558 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
11 Hb_000120_620 0.0934542573 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
12 Hb_000640_200 0.0936537135 - - hypothetical protein RCOM_1346600 [Ricinus communis]
13 Hb_002349_050 0.0937884463 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
14 Hb_004899_070 0.0944421559 - - PREDICTED: RRP12-like protein [Jatropha curcas]
15 Hb_000375_130 0.0951101624 - - Leucine-rich repeat transmembrane protein kinase family protein isoform 1 [Theobroma cacao]
16 Hb_001473_090 0.096147243 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
17 Hb_003097_180 0.0966988596 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
18 Hb_015026_050 0.0969297573 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_000935_090 0.0982577664 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
20 Hb_028872_120 0.0996480915 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]

Gene co-expression network

sample Hb_002066_080 Hb_002066_080 Hb_002392_030 Hb_002392_030 Hb_002066_080--Hb_002392_030 Hb_004629_010 Hb_004629_010 Hb_002066_080--Hb_004629_010 Hb_015099_010 Hb_015099_010 Hb_002066_080--Hb_015099_010 Hb_003029_130 Hb_003029_130 Hb_002066_080--Hb_003029_130 Hb_001221_160 Hb_001221_160 Hb_002066_080--Hb_001221_160 Hb_133047_010 Hb_133047_010 Hb_002066_080--Hb_133047_010 Hb_002392_030--Hb_133047_010 Hb_002392_030--Hb_004629_010 Hb_148909_030 Hb_148909_030 Hb_002392_030--Hb_148909_030 Hb_004659_080 Hb_004659_080 Hb_002392_030--Hb_004659_080 Hb_000375_130 Hb_000375_130 Hb_002392_030--Hb_000375_130 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_005104_010 Hb_005104_010 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_015099_010--Hb_000375_130 Hb_000832_220 Hb_000832_220 Hb_015099_010--Hb_000832_220 Hb_015099_010--Hb_003029_130 Hb_015099_010--Hb_002392_030 Hb_003124_130 Hb_003124_130 Hb_015099_010--Hb_003124_130 Hb_000209_070 Hb_000209_070 Hb_015099_010--Hb_000209_070 Hb_000487_220 Hb_000487_220 Hb_003029_130--Hb_000487_220 Hb_001473_090 Hb_001473_090 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_015475_020 Hb_015475_020 Hb_001221_160--Hb_015475_020 Hb_001221_160--Hb_004659_080 Hb_003858_090 Hb_003858_090 Hb_001221_160--Hb_003858_090 Hb_003710_040 Hb_003710_040 Hb_001221_160--Hb_003710_040 Hb_001221_160--Hb_133047_010 Hb_004899_070 Hb_004899_070 Hb_001221_160--Hb_004899_070 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_004884_010 Hb_004884_010 Hb_133047_010--Hb_004884_010 Hb_034243_020 Hb_034243_020 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_133047_010--Hb_148909_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.8959 62.7372 32.8942 28.8432 71.5272 82.9949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2956 11.5882 26.184 24.6872 25.5572

CAGE analysis