Hb_002066_110

Information

Type -
Description -
Location Contig2066: 127950-128510
Sequence    

Annotation

kegg
ID rcu:RCOM_0813640
description Polcalcin Jun o, putative (EC:1.3.1.74)
nr
ID XP_012066881.1
description PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
swissprot
ID Q9ZQE6
description Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1
trembl
ID B9RYI9
description Polcalcin Jun o, putative OS=Ricinus communis GN=RCOM_0813640 PE=4 SV=1
Gene Ontology
ID GO:0005739
description calmodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21277: 124862-127782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002066_110 0.0 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
2 Hb_002150_090 0.0670055433 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
3 Hb_001674_010 0.0697559903 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
4 Hb_001095_020 0.0751324942 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
5 Hb_008054_030 0.0763159037 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
6 Hb_003339_010 0.0795702763 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
7 Hb_000617_360 0.079768582 - - conserved hypothetical protein [Ricinus communis]
8 Hb_032920_020 0.0818454904 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_000718_060 0.0821679675 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
10 Hb_002572_040 0.0822769534 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
11 Hb_000028_190 0.0833635853 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
12 Hb_007163_100 0.0842597247 - - BnaC03g52280D [Brassica napus]
13 Hb_005694_160 0.0854325044 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000500_240 0.0872698771 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001032_020 0.0874556214 - - ankyrin repeat protein [Bruguiera gymnorhiza]
16 Hb_004635_120 0.0877392124 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
17 Hb_005337_100 0.087895692 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
18 Hb_000599_150 0.0908536608 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
19 Hb_012098_160 0.0923478017 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
20 Hb_004137_040 0.0941520225 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]

Gene co-expression network

sample Hb_002066_110 Hb_002066_110 Hb_002150_090 Hb_002150_090 Hb_002066_110--Hb_002150_090 Hb_001674_010 Hb_001674_010 Hb_002066_110--Hb_001674_010 Hb_001095_020 Hb_001095_020 Hb_002066_110--Hb_001095_020 Hb_008054_030 Hb_008054_030 Hb_002066_110--Hb_008054_030 Hb_003339_010 Hb_003339_010 Hb_002066_110--Hb_003339_010 Hb_000617_360 Hb_000617_360 Hb_002066_110--Hb_000617_360 Hb_000028_190 Hb_000028_190 Hb_002150_090--Hb_000028_190 Hb_002150_090--Hb_001095_020 Hb_007163_100 Hb_007163_100 Hb_002150_090--Hb_007163_100 Hb_002150_090--Hb_008054_030 Hb_002150_090--Hb_001674_010 Hb_032920_020 Hb_032920_020 Hb_001674_010--Hb_032920_020 Hb_001674_010--Hb_001095_020 Hb_001674_010--Hb_000028_190 Hb_000009_270 Hb_000009_270 Hb_001674_010--Hb_000009_270 Hb_001095_020--Hb_000028_190 Hb_004435_020 Hb_004435_020 Hb_001095_020--Hb_004435_020 Hb_001095_020--Hb_007163_100 Hb_001541_130 Hb_001541_130 Hb_001095_020--Hb_001541_130 Hb_008054_030--Hb_003339_010 Hb_008054_030--Hb_000028_190 Hb_008054_030--Hb_007163_100 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_003339_010--Hb_005762_010 Hb_003339_010--Hb_000028_190 Hb_003339_010--Hb_007163_100 Hb_003339_010--Hb_002150_090 Hb_004137_040 Hb_004137_040 Hb_003339_010--Hb_004137_040 Hb_052530_020 Hb_052530_020 Hb_000617_360--Hb_052530_020 Hb_000617_360--Hb_004137_040 Hb_000617_360--Hb_002150_090 Hb_000617_360--Hb_005762_010 Hb_001032_020 Hb_001032_020 Hb_000617_360--Hb_001032_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480099 4.21575 26.1731 31.2309 0.238511 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.223564 0.0878384 0 1.48332 27.3927

CAGE analysis